Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0167
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...    95   2e-20
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...    95   2e-20
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    94   4e-20
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   2.9  
At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co...    27   5.1  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   6.7  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   6.7  
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    27   8.9  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    27   8.9  
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)...    27   8.9  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           + GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K 
Sbjct: 84  ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143

Query: 434 KDELIIEGNSLE 469
           KDE++++GN +E
Sbjct: 144 KDEIVLDGNDIE 155



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 32/84 (38%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 185
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 186 EKWFGSKKELAAVRTVCSXVENML 257
           + WFG++K  A++RT  S V+N++
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           + GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K 
Sbjct: 84  ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143

Query: 434 KDELIIEGNSLE 469
           KDE++++GN +E
Sbjct: 144 KDEIVLDGNDIE 155



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 32/84 (38%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 185
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 186 EKWFGSKKELAAVRTVCSXVENML 257
           + WFG++K  A++RT  S V+N++
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 43/72 (59%), Positives = 53/72 (73%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVXSPKQ 433
           + GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K 
Sbjct: 84  IAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKV 143

Query: 434 KDELIIEGNSLE 469
           KDE+I+EGN +E
Sbjct: 144 KDEIILEGNDIE 155



 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 34/84 (40%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
 Frame = +3

Query: 21  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 185
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 186 EKWFGSKKELAAVRTVCSXVENML 257
           + WFGS+K  A++RT  S V+N++
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLI 84


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 42  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 185
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
           contains Pfam profile PF00535: glycosyl transferase,
           group 2 family protein
          Length = 668

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 304 SIHSTHLVLEAFSYSFNMFSTCEQTVLTAASSFLDPNHFSTFRRR 170
           S+ + + + +  S SFNM S  ++  +   S+F  P+   T RRR
Sbjct: 354 SLSNAYYLGDEISLSFNMDSKVDEETINVVSTFDWPHGPKTLRRR 398


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 221 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 126
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 155
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 42  QKVKIPDGLTVHVK-SRLVTVKGPRGVLKR 128
           ++  IPDG++ HVK SRL+   G  G + R
Sbjct: 191 EQAVIPDGISKHVKRSRLLLAGGLAGAVSR 220


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 456 PSMISS-SFCFGEXTTVTPGAI 394
           PS+IS+ S  FG  TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 418

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/57 (17%), Positives = 31/57 (54%)
 Frame = +3

Query: 6   KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 176
           K+  +  + +  +++++ DG T+H K + + ++    +LK+   +  +++  + P L
Sbjct: 198 KKDEDEAEEIETKEIELEDGETIHAKDKSLPLQTLIDILKQQTGNDNIEVGKIRPSL 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,542
Number of Sequences: 28952
Number of extensions: 224375
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)