Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0166
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    96   2e-21
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    95   4e-21
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    31   0.13 
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    27   1.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   2.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.8  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 45/69 (65%), Positives = 53/69 (76%)
 Frame = +2

Query: 260 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 439
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 440 ELIIEGNSL 466
           E+IIEGNSL
Sbjct: 141 EIIIEGNSL 149



 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 30/78 (38%), Positives = 50/78 (64%)
 Frame = +3

Query: 24  KQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVEKWFGS 203
           + I  ++   IP+G++V +K+RLVTVKGPRGVL +N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 204 KKXLAAVRTVCSHLENML 257
           +K  A +RT  S + NM+
Sbjct: 62  RKHNACIRTAYSIINNMI 79


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 95.5 bits (227), Expect = 4e-21
 Identities = 44/69 (63%), Positives = 53/69 (76%)
 Frame = +2

Query: 260 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 439
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 440 ELIIEGNSL 466
           E+I+EGNSL
Sbjct: 141 EIILEGNSL 149



 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 29/78 (37%), Positives = 48/78 (61%)
 Frame = +3

Query: 24  KQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVEKWFGS 203
           + I  ++   IP G+TV +K+R VTV GPRG L +N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 204 KKXLAAVRTVCSHLENML 257
           +K  A +R+V S + NM+
Sbjct: 62  RKHNACIRSVYSIINNMI 79


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 51   KIPDGLTVHVKSRLVTV---KGP-RGVLXRNFKHLAVDIRMVNPRLLKVEKWFGSKKXLA 218
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 219  AVRTVCSHLENML 257
             + T+CS L N+L
Sbjct: 1623 VLATICSCLGNLL 1635


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 268 SYSFNMFSKCEQT-VLTAASXFLDPNHFSTFRRR 170
           S SFN+ +KCE T  + A S +L P  F   + R
Sbjct: 480 SKSFNIIAKCEDTGSMEALSDYLKPLQFGKVKSR 513


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 233 DCPHGGKXLFGSEPFLNLQETRVYHANVNSQVFEVPXENSAGPFNCHQT 87
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 325  DTVNGEVSIHSTHLVLEAFSYSFNMFSKCEQTVLTAASXF--LDPNHFSTFRRRGFTMR 155
            + VN   +IH T LV   FS  +N+FS      L + + F  LD +    F R   T +
Sbjct: 1485 ENVNSYNTIHLTPLVFSHFSSWWNLFSNNMSYPLRSGNLFPTLDSSPNKKFGRHLATFK 1543


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 247 SKCEQTVLTAASXFLDPNHFSTFRRRGFTMRMSTAKC--LKFLXRTPRG 107
           +K +   +  A  FL+P   STF R  F+  +S   C  LK L R+P G
Sbjct: 331 NKVKNNSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKEL-RSPTG 378


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +3

Query: 51  KIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVEKWFGSKKXLAAVRT 230
           ++PDG  + + S + ++      L   F    +  R + P     + W   K       T
Sbjct: 459 QVPDGYLLQLLSEVNSLNMVPAELATFFVESMLRPRKLEPPFYLQQCW--GKIFKKKFTT 516

Query: 231 VCSHLENMLKE*LKAS 278
           +C  +E+ L E +KAS
Sbjct: 517 ICERIESTLHELVKAS 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,039
Number of Sequences: 5004
Number of extensions: 42265
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)