Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0166
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     99   2e-21
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    99   2e-21
12_02_0154 + 14494319-14495857                                         29   2.9  
02_04_0147 + 20194244-20195717,20195953-20195969                       27   8.8  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    27   8.8  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   8.8  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 80  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 139

Query: 434 KDELIIEGNSL 466
           KDEL+++GN +
Sbjct: 140 KDELVLDGNDI 150



 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 38/80 (47%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
 Frame = +3

Query: 21  MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMV-NPRLLKVEKWF 197
           MK I+A++  +IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 198 GSKKXLAAVRTVCSHLENML 257
           G+++ +AA+RT  SH++N++
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 73  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 132

Query: 434 KDELIIEGNSL 466
           KDEL+++GN +
Sbjct: 133 KDELVLDGNDI 143



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 35/72 (48%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
 Frame = +3

Query: 51  KIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMV---NPRLLKVEKWFGSKKXLAA 221
           +IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +AA
Sbjct: 2   EIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAA 61

Query: 222 VRTVCSHLENML 257
           +RT  SH++N++
Sbjct: 62  IRTAISHVQNLI 73


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 135 KHLAVDIRMVNPRLLKVEKWFGSKKXLAAVRTVCSHLENMLKE*LKA 275
           KH+  D+   +  L ++E+ F +K+ L     V  H +NML+E LK+
Sbjct: 257 KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 57  PDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVE 188
           PD + VH+++  V  +    V+   F H   D+R  +PR+  +E
Sbjct: 168 PDRVRVHLRAVDVAARETHPVIC--FSHADADLRSADPRVFTIE 209


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 191 FLNLQETRVYHANVNSQVFEVPXENSAGPFNCH 93
           F NL +T+ +H N NS   ++P E S  P   H
Sbjct: 169 FANLNKTKHFHMNNNSLSGQIPPELSRLPSLVH 201


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 54  IPDGLTVHVKSRLVTVKGPRGVLXRN 131
           +P G T H +S +  V+GPRG +  N
Sbjct: 61  LPRGATSHRESGISAVRGPRGRIGEN 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,409
Number of Sequences: 37544
Number of extensions: 281006
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)