Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0166
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 91 4e-19
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 29 2.2
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 5.2
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 27 6.9
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 9.1
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_42748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 91.5 bits (217), Expect = 4e-19
Identities = 40/80 (50%), Positives = 58/80 (72%)
Frame = +3
Query: 21 MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVEKWFG 200
MK I+A++ IPD + V VKSR+VTV GPRG L RNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 201 SKKXLAAVRTVCSHLENMLK 260
S+K LA V+T+ +H+ENM+K
Sbjct: 617 SRKELACVKTIITHIENMIK 636
Score = 79.4 bits (187), Expect = 2e-15
Identities = 32/50 (64%), Positives = 41/50 (82%)
Frame = +2
Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 403
+KGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 635 IKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 3 VKQSPNMKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRN 131
++ + +K++ + K K DG+ VH K+ TV+ PRG R+
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRGKSLRD 140
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 235 QTVLTAASXFLDPNHFSTFRRRGFTMRMSTAKCLKFLXRTPRGPLTVT 92
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 182 LQETRVYHANVNSQVFEVPXENSAGPFNCHQ 90
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 340 ITLSGDTVNGEVSIHSTHLVLEAFSYSFNMFS 245
+T+ D G VS H+THLV A S ++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 459 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 340
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 110 GPFNCHQTRFHMD--RKPVW---DFXFLICYNLLH 21
GP +C +TRF +D R P W D+ L+C +++
Sbjct: 14 GPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -2
Query: 396 IFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLTCSLNVNRLSSRR 217
IF+ + ++P+K + +I+ LP + + A L WKP L L + S
Sbjct: 18 IFSRVSGYTPRKRKTAILALPFLARPKWRPFGFVAFPLRWKPTERLLRRLLGLAARDSNN 77
Query: 216 QAPFWIRTISQPSGDEGLPC 157
+ I P GD PC
Sbjct: 78 TSVLPI----APGGDTADPC 93
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 266 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
T+G MR + P + VTTE ++++ +GE+ + P T++ +P Q
Sbjct: 384 TRGDHVTMRGEHPTTPASSVTTEDKDLLQML-AVGEQGLANKGTVPQSTLITTPIQ 438
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 110 GPFNCHQTRFHMD--RKPVWDFXFLIC 36
GP +C +TRF +D R P D+ L+C
Sbjct: 720 GPTSCGKTRFIVDRLRGPFLDYIVLVC 746
>SB_42748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 280 LEAFSYSFNMFSKCEQTVLTAAS 212
+ +F+YSFN F +CE +V+ S
Sbjct: 1 MASFAYSFNPFRECEVSVMRVRS 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,417
Number of Sequences: 59808
Number of extensions: 331753
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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