Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0166
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    97   7e-21
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   6.0  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 42/71 (59%), Positives = 53/71 (74%)
 Frame = +2

Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
           +KGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  Q
Sbjct: 79  IKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQ 138

Query: 434 KDELIIEGNSL 466
           KDE+++EGN +
Sbjct: 139 KDEIVVEGNDV 149



 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 38/80 (47%), Positives = 57/80 (71%)
 Frame = +3

Query: 21  MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMVNPRLLKVEKWFG 200
           MK I +N     P+G+T  VK+R+V V GPRG + ++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 201 SKKXLAAVRTVCSHLENMLK 260
            +K LAA+RTVCSH++NM+K
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 263  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 400
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 499 WMRAAELETSSQRVAFND*FILLFWRVND 413
           W R A  +T  Q + + D F L+ W +ND
Sbjct: 170 WKRNAAFQTVFQNLTWVDFFFLMTWCIND 198


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 403 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 269
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 196 NHFSTFRRRGFTMRMSTAKCLKFLXRTPRGPLTVTRRDFT 77
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 298 HSTHLVLEAFSYSFNMFSKCEQTVLTAASXFL-DPNHFSTFRRRGFTMRMSTAKCLKF 128
           ++TH+ LE  S  F+ FS CE   + A+     D         +G ++R    +C  F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 218 RREDSLFTFREHVKGVTKGFQYK 286
           +R+  + +F + +KGVTKG QYK
Sbjct: 246 KRKSDVSSFWKLIKGVTKGRQYK 268


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 427 WRVNDSHTRCHLYPSD 380
           W V+D  T C+L+PSD
Sbjct: 71  WMVSDYDTSCYLFPSD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,171
Number of Sequences: 27780
Number of extensions: 245960
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)