Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0166
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.4  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 230 CPHGGKXLFGSEPFLN 183
           CP     LF S PFLN
Sbjct: 383 CPESDSILFVSSPFLN 398


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 182 LQETRVY-HANVNSQVFEVPXE 120
           LQ+ R+    N+N+Q+F+ P E
Sbjct: 59  LQKLRLLLQGNINNQLFQTPCE 80


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 197 RIQKGACRREDSLFTFREHVKGVTKGFQYKMRAVY 301
           ++  G C+  D L T R H++   +     +  VY
Sbjct: 240 QVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 330 LRVIQLLRYVTSW 368
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 330 LRVIQLLRYVTSW 368
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 330 LRVIQLLRYVTSW 368
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 197 RIQKGACRREDSLFTFREHVKGVTKGFQYKMRAVY 301
           ++  G C+  D L T R H++   +     +  VY
Sbjct: 240 QVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,798
Number of Sequences: 438
Number of extensions: 2752
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)