Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0166
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 93 8e-20
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 93 8e-20
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 93 1e-19
At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co... 29 1.8
At3g56480.1 68416.m06281 myosin heavy chain-related contains wea... 28 4.2
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 4.2
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 5.6
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 27 7.4
At3g15605.1 68416.m01978 hypothetical protein 27 7.4
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 93.5 bits (222), Expect = 8e-20
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +2
Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
+ GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K
Sbjct: 84 ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143
Query: 434 KDELIIEGNSL 466
KDE++++GN +
Sbjct: 144 KDEIVLDGNDI 154
Score = 77.8 bits (183), Expect = 4e-15
Identities = 32/84 (38%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Frame = +3
Query: 21 MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMV-----NPRLLKV 185
MK I++++ IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 186 EKWFGSKKXLAAVRTVCSHLENML 257
+ WFG++K A++RT SH++N++
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 93.5 bits (222), Expect = 8e-20
Identities = 41/71 (57%), Positives = 53/71 (74%)
Frame = +2
Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
+ GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K
Sbjct: 84 ISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKV 143
Query: 434 KDELIIEGNSL 466
KDE++++GN +
Sbjct: 144 KDEIVLDGNDI 154
Score = 77.8 bits (183), Expect = 4e-15
Identities = 32/84 (38%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Frame = +3
Query: 21 MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMV-----NPRLLKV 185
MK I++++ IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 186 EKWFGSKKXLAAVRTVCSHLENML 257
+ WFG++K A++RT SH++N++
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 92.7 bits (220), Expect = 1e-19
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = +2
Query: 254 VKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 433
+ GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M GV +V S K
Sbjct: 84 IAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKV 143
Query: 434 KDELIIEGNSL 466
KDE+I+EGN +
Sbjct: 144 KDEIILEGNDI 154
Score = 81.0 bits (191), Expect = 4e-16
Identities = 34/84 (40%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Frame = +3
Query: 21 MKQIVANQKXKIPDGLTVHVKSRLVTVKGPRGVLXRNFKHLAVDIRMV-----NPRLLKV 185
MK I++++ IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 186 EKWFGSKKXLAAVRTVCSHLENML 257
+ WFGS+K A++RT SH++N++
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLI 84
>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
contains Pfam profile PF00535: glycosyl transferase,
group 2 family protein
Length = 668
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 304 SIHSTHLVLEAFSYSFNMFSKCEQTVLTAASXFLDPNHFSTFRRR 170
S+ + + + + S SFNM SK ++ + S F P+ T RRR
Sbjct: 354 SLSNAYYLGDEISLSFNMDSKVDEETINVVSTFDWPHGPKTLRRR 398
>At3g56480.1 68416.m06281 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, cardiac muscle alpha
isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
(Swiss-Prot:P04460) [Oryctolagus cuniculus]
Length = 490
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 353 IRNFLGEKYIRRVKMAPGVTVVNSPKQKDE--LIIEG-NSLGRCL 478
+RN + EKY+ VK+ + ++ ++ ++EG SLG CL
Sbjct: 251 LRNRIQEKYMNSVKLHKEIAIIKRVEESKSCPFVLEGKQSLGSCL 295
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -2
Query: 456 PSMISS-SFCFGELTTVTPGAI 394
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 221 GGKXLFGSEPFLN-LQETRVYHANVNSQVFEVP 126
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 224 EDSLFTFREHVKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 361
+D+L +FR+ +KG KG + V H ++ VT IE N
Sbjct: 75 DDTLASFRKRLKGNKKGVESGTSRVRNHEGVDTVTNSNLKPIEEAN 120
>At3g15605.1 68416.m01978 hypothetical protein
Length = 543
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 104 FNCHQTRFHMDRKPVWDFXFLIC 36
F HQ RF + +P WD FL C
Sbjct: 109 FTRHQQRFLGEYEPQWDELFLAC 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,430
Number of Sequences: 28952
Number of extensions: 225408
Number of successful extensions: 530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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