Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0164
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   3.5  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   3.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   4.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   8.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.0  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 38  FGSAENRRSPF-SIFDTNPRILT 103
           +G   N +SPF  IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -3

Query: 509 GSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSIQRCSSWHRYSSGGVIRATITSSK* 330
           GSY+++Y S     +   L    +   ++ +P+P  +R S    Y+SG V  AT  S+  
Sbjct: 161 GSYSQTYQSNANYTASSPLP---TASANAPLPVPPPRRVSQNSSYASGSVPAATAASTAS 217

Query: 329 P 327
           P
Sbjct: 218 P 218


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 409 PPYNGAALGTDTPQGESS 356
           PPY+ AA  ++TPQ E+S
Sbjct: 112 PPYSPAATASNTPQNEAS 129


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -3

Query: 557 AAKVARRLGAHVLGQRGSYNRSYVSTIAAISGLVLVQRISTRVSSSVPI-PSIQRCSSWH 381
           A K+ R   A  LGQ G  ++  V ++A  +   L+   S     +V +  + +RC  W 
Sbjct: 44  ATKMDRMFAAPFLGQLGRGHQDGVYSLARDTK-TLIDCASGSGDGAVKLWDASERCERWT 102

Query: 380 RYSSGGVIRATITSSK 333
             +  G++R  + S++
Sbjct: 103 SKAHEGIVRGLVFSNQ 118


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 329 PPNSDFRSSMRSLPYSRVKACDMACAACWTW 237
           P N  ++    +  Y RV+ C++AC    +W
Sbjct: 166 PVNDHYKKEGLAPAYHRVRMCELACERTSSW 196


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 562 RRRRKSPDVSEHMCSASGGRTIVRMC 485
           RRRRK+   +   CSA GGR +   C
Sbjct: 107 RRRRKATIRNVDYCSACGGRGLFICC 132


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 442  ILCTRTKPEIAAIVDTYERLYD 507
            + CTR + E  A VD YE+L D
Sbjct: 2156 LYCTRVQKERFASVDEYEKLKD 2177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,234
Number of Sequences: 5004
Number of extensions: 57900
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)