BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0162 (578 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 119 3e-28 SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 118 5e-28 SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.5 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.0 SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.5 SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.1 SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.1 >SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 3|||Manual Length = 189 Score = 119 bits (287), Expect = 3e-28 Identities = 61/105 (58%), Positives = 73/105 (69%) Frame = +3 Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434 GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140 Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTV 569 E+IIEGNSLE+VS SAA I+Q VR + LDG Y SE + Sbjct: 141 EIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185 Score = 70.1 bits (164), Expect = 2e-13 Identities = 32/78 (41%), Positives = 52/78 (66%) Frame = +1 Query: 19 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198 + I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61 Query: 199 KKELAAVRTVCSHVENMI 252 +K A +RT S + NMI Sbjct: 62 RKHNACIRTAYSIINNMI 79 >SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 1|||Manual Length = 190 Score = 118 bits (285), Expect = 5e-28 Identities = 60/105 (57%), Positives = 73/105 (69%) Frame = +3 Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434 GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KD Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140 Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTV 569 E+I+EGNSLE+VS SAA I+Q VR + LDG Y SE + Sbjct: 141 EIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185 Score = 66.5 bits (155), Expect = 3e-12 Identities = 31/78 (39%), Positives = 50/78 (64%) Frame = +1 Query: 19 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 198 + I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61 Query: 199 KKELAAVRTVCSHVENMI 252 +K A +R+V S + NMI Sbjct: 62 RKHNACIRSVYSIINNMI 79 >SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1717 Score = 27.5 bits (58), Expect = 1.5 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 46 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 213 K+PDG+ + SRL K P L F H +VD+ + L + E WF Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622 Query: 214 AVRTVCSHVENMI 252 + T+CS + N++ Sbjct: 1623 VLATICSCLGNLL 1635 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 27.1 bits (57), Expect = 2.0 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +3 Query: 414 NSPKQKDELIIEGNSLEDVSSSAALIQQS 500 +SPK+K +L ++G L+ + + +LI+QS Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277 >SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 26.2 bits (55), Expect = 3.5 Identities = 13/49 (26%), Positives = 22/49 (44%) Frame = -3 Query: 228 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 82 D P+G GS F+ V+H+N N+ ++ +N N H + Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434 >SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1184 Score = 25.4 bits (53), Expect = 6.1 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 222 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 100 PH GK S +N E+R A+V+S + PF GP Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166 >SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 25.4 bits (53), Expect = 6.1 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = -1 Query: 212 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 102 A SFL+P STF R F+ +S C + LR+P G Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,472,815 Number of Sequences: 5004 Number of extensions: 50858 Number of successful extensions: 157 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 155 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 248115846 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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