Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0162
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 125 2e-29
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 5.5
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 7.3
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 27 7.3
L15314-8|AAF99990.2| 316|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p... 27 9.6
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related (... 27 9.6
AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E... 27 9.6
AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 125 bits (302), Expect = 2e-29
Identities = 60/106 (56%), Positives = 76/106 (71%)
Frame = +3
Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
GVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV S QKD
Sbjct: 81 GVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKD 140
Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTVV 572
E+++EGN ++ VS +AA IQQST V+ + LDG Y SE+TT+V
Sbjct: 141 EIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186
Score = 97.5 bits (232), Expect = 6e-21
Identities = 41/80 (51%), Positives = 60/80 (75%)
Frame = +1
Query: 16 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 195
MK I +N V P+G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 196 SKKELAAVRTVCSHVENMIK 255
+KELAA+RTVCSH++NMIK
Sbjct: 61 VRKELAAIRTVCSHIKNMIK 80
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 258 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 395
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 398 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 264
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 144 NSQVFEVPFENSAGPFNCHQTRFHMDR 64
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 144 NSQVFEVPFENSAGPFNCHQTRFHMDR 64
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 251 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 129
+++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>L15314-8|AAF99990.2| 316|Caenorhabditis elegans Hypothetical
protein K06H7.1 protein.
Length = 316
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 515 YSYCSRLLDESSRARDIFQRVAFND*FILLFW 420
+S+ S +DE+ A I +R++ ND F++L W
Sbjct: 215 FSFYSDRIDENIVAHAIKKRLSLNDQFVVLEW 246
>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
protein Y49E10.11b protein.
Length = 1089
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 390 MAPGVTVVNSPKQKD-ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETT 566
MA TVV P+ KD +LI + +S ++ + QS + R + + +G +ET
Sbjct: 444 MAVCHTVV--PENKDGQLIYQSSSPDEAALVRGAASQSVSFHTRQPQKVICNVFGEDETI 501
Query: 567 VVLD 578
+LD
Sbjct: 502 EILD 505
>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
protein Y49E10.11a protein.
Length = 1139
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 390 MAPGVTVVNSPKQKD-ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETT 566
MA TVV P+ KD +LI + +S ++ + QS + R + + +G +ET
Sbjct: 444 MAVCHTVV--PENKDGQLIYQSSSPDEAALVRGAASQSVSFHTRQPQKVICNVFGEDETI 501
Query: 567 VVLD 578
+LD
Sbjct: 502 EILD 505
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSL-DGPYGSEETTVV 572
EL +E NSL + SSA + Q++T + + +S+ + P G+ + V+
Sbjct: 190 ELSLETNSLTSIPSSALVNQRNTLTNLNLGLNSINEVPVGALDFPVL 236
>U41019-3|AAA82329.3| 531|Caenorhabditis elegans Sop-2 related
(ectopic expressionof hox genes) protein 3 protein.
Length = 531
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 191 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 72
NH ++R+ M T K + TP G L +T + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466
>AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E2
ATPase protein.
Length = 815
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 390 MAPGVTVVNSPKQKD-ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETT 566
MA TVV P+ KD +LI + +S ++ + QS + R + + +G +ET
Sbjct: 120 MAVCHTVV--PENKDGQLIYQSSSPDEAALVRGAASQSVSFHTRQPQKVICNVFGEDETI 177
Query: 567 VVLD 578
+LD
Sbjct: 178 EILD 181
>AF022970-7|AAB69900.2| 322|Caenorhabditis elegans Hypothetical
protein F13A2.6 protein.
Length = 322
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 422 WRVNDSHTRCHLYPSD 375
W V+D T C+L+PSD
Sbjct: 71 WMVSDYDTSCYLFPSD 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,792
Number of Sequences: 27780
Number of extensions: 290707
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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