Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0162
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   115   2e-26
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   115   2e-26
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   113   8e-26
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    33   0.18 
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   3.9  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.2  
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00...    27   6.8  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   9.0  
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ...    27   9.0  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.0  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  115 bits (277), Expect = 2e-26
 Identities = 57/106 (53%), Positives = 73/106 (68%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTVV 572
           E++++GN +E VS S ALI Q   V+ +     LDG Y SE++ +V
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIV 191



 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 16  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 180
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 181 EKWFGSKKELAAVRTVCSHVENMI 252
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  115 bits (277), Expect = 2e-26
 Identities = 57/106 (53%), Positives = 73/106 (68%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTVV 572
           E++++GN +E VS S ALI Q   V+ +     LDG Y SE++ +V
Sbjct: 146 EIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIV 191



 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 16  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 180
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 181 EKWFGSKKELAAVRTVCSHVENMI 252
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  113 bits (272), Expect = 8e-26
 Identities = 57/108 (52%), Positives = 72/108 (66%)
 Frame = +3

Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 434
           GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KD
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145

Query: 435 ELIIEGNSLEDVSSSAALIQQSTTVRIRISESSLDGPYGSEETTVVLD 578
           E+I+EGN +E VS S ALI Q   V+ +     LDG Y SE+  + ++
Sbjct: 146 EIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVE 193



 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = +1

Query: 16  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 180
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 181 EKWFGSKKELAAVRTVCSHVENMI 252
           + WFGS+K  A++RT  SHV+N+I
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLI 84


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 24/76 (31%), Positives = 39/76 (51%)
 Frame = +3

Query: 306 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 485
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 486 LIQQSTTVRIRISESS 533
            +QQST+VR R SE++
Sbjct: 762 ELQQSTSVRGRYSETA 777


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 37  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 180
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 451 PSMISS-SFCFGELTTVTPGAI 389
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 472

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 541 PSKELSDILILTVVDCWMRAAELETSSKELPSMISSSF--CFGELTTVTPGAIFTLLMYF 368
           PSK ++ +L+ ++   W+R   L +   + PS+ S S   C+G   T   G    L++  
Sbjct: 169 PSKFVNPVLLRSLSIGWVRLENLHSLLSKSPSLQSLSIKNCWGVDITSMAGQFRELVIEH 228

Query: 367 SPKKLRISIIELPSV 323
           S         ELP +
Sbjct: 229 SDFSYMQCAFELPRI 243


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 216 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 121
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 566

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 278 VLEAFSYSLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPR 105
           +L  F    +M ST        ASSF+D N   T     F++ +    C+ F +  PR
Sbjct: 120 LLTMFPRIALMLSTGLSLSRDVASSFIDDNVGLTVGHTVFSLTIQWGACVVFSITGPR 177


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 150
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,091
Number of Sequences: 28952
Number of extensions: 267622
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)