Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0161
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 32 0.024
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 29 0.29
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 1.6
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 2.7
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 3.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 3.6
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 3.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 4.8
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 24 8.3
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 24 8.3
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 24 8.3
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 32.3 bits (70), Expect = 0.024
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 187 WSDWSTTKTDINSRWISVRIINRVKLPLLRTHRSNSSIKSYN 312
W D + + I+ R I +INRV LPL+ T ++NSS S N
Sbjct: 2818 WDDINLWRDLISWRQIVFSMINRVYLPLVPTIQANSSADSSN 2859
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 28.7 bits (61), Expect = 0.29
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 359 HHVALGCMTTKSRGHQLYDLIDEFDLCVLNN 267
H L C + LYD IDE D VLN+
Sbjct: 200 HQSLLSCFLVVLLSNTLYDSIDELDFSVLNS 230
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 359 HHVALGCMTTKSRGHQLYDLIDEFDLCVLNNGSF 258
H + +GC+T K RG+ L+ + + ++ F
Sbjct: 409 HELVMGCITLKIRGYGLFFQMTQIPYIIIQRQKF 442
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 279 CP*QW*LHSINYPNRNPSAIDVSFC 205
CP + L S N PN+NP A ++ C
Sbjct: 95 CPWAYILSSKNNPNQNPQAAALTKC 119
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 3.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 242 LTEIH-RL-LMSVFVVLQSLHYANGGCMMILWGAIIF 138
L+E++ RL L SV +V+ + GGC +W +IF
Sbjct: 167 LSEVYGRLPLYSVTLVIFVVFQIGGGCSKNIWSLVIF 203
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 3.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 198 PITPLCEWWVHDDSMGSYHFPTLTRVLLSVDRYQ 97
PI PL EW +H ++ + + ++ + D Y+
Sbjct: 386 PILPLTEWIMHQPNVKPHDITAVWKLTAARDEYR 419
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 3.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 353 VALGCMTTKSRGHQLYDLI 297
V LG + TK++GH++ DLI
Sbjct: 411 VFLGNLHTKTKGHEICDLI 429
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 162 HHAPTIRIVE*LEHYKN*HQ 221
HH PT RI + +EH N Q
Sbjct: 1350 HHRPTYRIAKIMEHLGNVQQ 1369
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 281 CVLNNGSFTLLIILTEIHRLLMSVFVVLQSLHYANG 174
C+ NN S T +L + V +V +H+ NG
Sbjct: 205 CLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNG 240
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 87 PIEKFLYNKTDWTKYNELSL 28
P KF+Y D+TK N LSL
Sbjct: 33 PEAKFVYKLLDYTKGNWLSL 52
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 242 LTEIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPL 108
L+ +H L S F++ + G CM+++W + LL P+
Sbjct: 285 LSHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPI 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,213
Number of Sequences: 5004
Number of extensions: 30050
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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