Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0161
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    29   1.1  
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    27   6.0  
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    26   7.9  

>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 254 LLIILTEIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPL 108
           LLI    + +L+ ++  V  ++ +A+   +   W  +I+L  LVFY PL
Sbjct: 794 LLICAFILAQLVATLIAVYATISFASISAIGWGWAGVIWLYSLVFYAPL 842


>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 105 RYQINPPIEKFLYNKTDWTKYNE 37
           RYQ+N P++K   +  +W KY +
Sbjct: 258 RYQVNAPVDKPADDGYNWRKYGQ 280


>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 278 VLNNGSFTLLIILTEIHRLLMSVFVVLQSL 189
           +L   SF + ++LTE+   LMS F++L ++
Sbjct: 81  ILKEKSFNIDLVLTEVELPLMSGFLLLSTI 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,517,488
Number of Sequences: 37544
Number of extensions: 180322
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)