BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0161 (363 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438... 29 1.1 12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 27 6.0 09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 26 7.9 >03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117, 4386213-4386373,4386470-4386551,4386626-4386658, 4386755-4387161,4387237-4387381,4387483-4387587, 4387704-4387826,4387908-4388027,4388118-4388237, 4388569-4388775,4388857-4389036,4389151-4389285, 4389382-4389519,4389630-4389728,4389832-4389951, 4390029-4390091 Length = 935 Score = 29.1 bits (62), Expect = 1.1 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -2 Query: 254 LLIILTEIHRLLMSVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPL 108 LLI + +L+ ++ V ++ +A+ + W +I+L LVFY PL Sbjct: 794 LLICAFILAQLVATLIAVYATISFASISAIGWGWAGVIWLYSLVFYAPL 842 >12_02_0478 + 19514509-19514940,19515749-19515820,19515954-19515986, 19516169-19516830,19516905-19517045,19518634-19518830, 19518878-19518965,19518987-19519041,19519501-19519571, 19519709-19519763,19519881-19519896,19520286-19520361, 19521202-19521240,19521312-19521333 Length = 652 Score = 26.6 bits (56), Expect = 6.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -1 Query: 105 RYQINPPIEKFLYNKTDWTKYNE 37 RYQ+N P++K + +W KY + Sbjct: 258 RYQVNAPVDKPADDGYNWRKYGQ 280 >09_06_0059 - 20584196-20584288,20584389-20585055,20585411-20585732, 20585862-20586000,20586261-20586322,20586371-20586434, 20586674-20586826,20586952-20587082,20587175-20587336, 20588060-20588264 Length = 665 Score = 26.2 bits (55), Expect = 7.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -2 Query: 278 VLNNGSFTLLIILTEIHRLLMSVFVVLQSL 189 +L SF + ++LTE+ LMS F++L ++ Sbjct: 81 ILKEKSFNIDLVLTEVELPLMSGFLLLSTI 110 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,517,488 Number of Sequences: 37544 Number of extensions: 180322 Number of successful extensions: 403 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 401 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 403 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 566473892 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -