Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0160
(734 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 157 3e-37
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 73 7e-12
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 69 1e-10
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 62 1e-08
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 58 2e-07
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 55 2e-06
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 51 3e-05
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 50 6e-05
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 49 1e-04
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 49 1e-04
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 48 2e-04
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 48 3e-04
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 46 7e-04
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 46 0.001
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 46 0.001
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 43 0.007
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 42 0.021
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 41 0.036
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 40 0.084
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 38 0.19
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 38 0.26
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 36 0.78
UniRef50_A4JKJ0 Cluster: Diguanylate cyclase; n=1; Burkholderia ... 34 4.2
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.5
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 33 5.5
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 33 7.3
UniRef50_A6SKX3 Cluster: Putative uncharacterized protein; n=2; ... 33 7.3
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 7.3
UniRef50_Q5FNA8 Cluster: Putative sensory transduction histidine... 33 9.6
UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1; ... 33 9.6
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 157 bits (381), Expect = 3e-37
Identities = 104/237 (43%), Positives = 120/237 (50%)
Frame = +3
Query: 3 PTQXXXXXXXXXXXXGGLTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXX 182
PTQ G LTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG
Sbjct: 3 PTQPKAAAKPAAAPAGALTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPK 62
Query: 183 XXXXXXLTVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSDPT* 362
LTVVVKQIGGEKNGGTRT P P + K + P
Sbjct: 63 PEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNL 122
Query: 363 R*ELFAFSSLVDMQARGLYLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISL 542
+ + + L+ P+ LLVTGPFAFNSCPLR + R GTSTRISL
Sbjct: 123 KIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI-PQRYVIGTSTRISL 181
Query: 543 RQLQNCQNTFNDDLLQEXLRSASNVQSNAKXVMTFFCHXKKGXYVPIWSKRQKPXQK 713
+ FNDD ++ + + F KK YVP S+++K QK
Sbjct: 182 GNFK-LPKHFNDDYFKKNKKCVKRTVKRKEGDDIF--ATKKEKYVP--SEQRKTDQK 233
Score = 151 bits (366), Expect = 2e-35
Identities = 78/110 (70%), Positives = 82/110 (74%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 142
Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKHF 571
VGILPSGL F P + IPQ YVI + KLPKHF
Sbjct: 143 VGILPSGLLLVTGPFAFNSCPLRR-IPQRYVI-GTSTRISLGNFKLPKHF 190
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 72.9 bits (171), Expect = 7e-12
Identities = 44/109 (40%), Positives = 58/109 (53%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + + LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
+ +L SGL F + P + V Q YVI K+P+H
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRV-SQRYVI-GTSSKVDLGAFKVPEH 181
Score = 67.7 bits (158), Expect = 3e-10
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = +3
Query: 63 KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 242
KK K P N L G++R+SK++M+ ++A Y+ VK+IGG KNG
Sbjct: 15 KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74
Query: 243 GTRTYPSNVGSPSTPLRR--KSVPHLVAVHSASMYAGSDPT*R*ELFAFSSLVDMQARGL 416
G RT S P + K P + T L + Q + +
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAG--RHQGKRV 132
Query: 417 YLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISL 542
LL+ + LLVTGPFA NSCPLR + R GTS+++ L
Sbjct: 133 VLLKVLASGLLLVTGPFALNSCPLRRV-SQRYVIGTSSKVDL 173
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 68.9 bits (161), Expect = 1e-10
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 415
G + + L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRV
Sbjct: 103 GTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 416 VLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
V + L SGL + VP + Q +VI + K+PKH
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRT-HQKFVIA-TSTKIDISNVKIPKH 211
Score = 50.8 bits (116), Expect = 3e-05
Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 12/181 (6%)
Frame = +3
Query: 48 GGLTKKKSTK-KP---RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXL 203
G L KK K KP RN L G+ R+S+S M+ +KA KY L
Sbjct: 30 GNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVL 89
Query: 204 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSDPT*R*ELFAF 383
V K +GG+KNGGTR P + VP + H ++ R +
Sbjct: 90 ATVTKPVGGDKNGGTRVVKLRKMPRYYP--TEDVPRKLLSHGKKPFSQHVRKLRASITPG 147
Query: 384 SSLVDMQAR----GLYLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISLRQL 551
+ L+ + R + L+ + LLVTGP N PLR + TST+I + +
Sbjct: 148 TILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTH-QKFVIATSTKIDISNV 206
Query: 552 Q 554
+
Sbjct: 207 K 207
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 62.1 bits (144), Expect = 1e-08
Identities = 41/109 (37%), Positives = 59/109 (54%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +P++R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 63 GKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
+ L SGL F I VP + IPQ YVI + + KLP+H
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRR-IPQSYVIA-TSTHIDVSDVKLPEH 167
Score = 51.2 bits (117), Expect = 3e-05
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = +3
Query: 66 KSTKKP-RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 242
KS P RN +L G+ R+S+S ++ K+A YK T K IGG+KNG
Sbjct: 4 KSKDHPSRNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNG 62
Query: 243 GTRTYPSNVGSPSTPLR--RKSVPHLVAVHSASMYAGSDPT*R*ELFAFSSLVDMQARGL 416
G R P S P R+ + + A + + P L A + + + +
Sbjct: 63 GKRVVPVQRESRYYPTEDVRRRLANRKKPGMAKLRSSITPGTVLILLAGAH----RGKRV 118
Query: 417 YLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISLRQLQNCQNTFNDD 581
L+ + LLVTGPF N PLR + + + TST I + ++ ++ F D+
Sbjct: 119 VFLKQLNSGLLLVTGPFKINGVPLRRIPQSYV-IATSTHIDVSDVKLPEHAFADE 172
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 58.0 bits (134), Expect = 2e-07
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Frame = +3
Query: 81 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYP 260
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 261 SNVGSPSTPL----RRKSVPHLVAVHSASMYAGSDPT*R*ELFAFSSLVDMQARGLYLLE 428
S P + K H+ + T L + + + + L+
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAG--PHRGKRVVFLK 142
Query: 429 FCPAVCLLVTGPFAFNSCPLRPLFLNRM-*FGTSTRISLRQLQ 554
L VTGP+ N CPLR +N++ TST++ L +++
Sbjct: 143 QLKTGLLPVTGPYGVNGCPLRR--INQIYVIATSTKLDLSKVK 183
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 415
G + +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRV
Sbjct: 79 GKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRV 138
Query: 416 VLVGILPSGL 445
V + L +GL
Sbjct: 139 VFLKQLKTGL 148
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 54.8 bits (126), Expect = 2e-06
Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 257 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 427
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 428 ILPSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
L SGL F VP + V Q YVI
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRV-NQCYVI 142
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 51.2 bits (117), Expect = 3e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +2
Query: 302 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFV 481
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL + + V
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 482 PAKAVIPQPYVI 517
P + V P Y+I
Sbjct: 80 PVRRVNP-AYII 90
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 50.0 bits (114), Expect = 6e-05
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +2
Query: 278 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFS 454
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGL
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 455 YWTFCIQFVPAKAVIPQPYVI 517
F I VP + V QPYVI
Sbjct: 110 TGPFKINGVPIRRV-NQPYVI 129
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/87 (33%), Positives = 49/87 (56%)
Frame = +2
Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
P ++ + +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV+L+ L
Sbjct: 26 PSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLG 83
Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517
G+ F + VP + V + YVI
Sbjct: 84 QGVLLVTGPFKLNGVPLRRVNAR-YVI 109
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 48.8 bits (111), Expect = 1e-04
Identities = 31/64 (48%), Positives = 36/64 (56%)
Frame = +2
Query: 326 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQ 505
F+ H RRIR ++ G V ILLAGRH KRVV + L SGL F VP + V Q
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRV-NQ 144
Query: 506 PYVI 517
YVI
Sbjct: 145 RYVI 148
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 48.4 bits (110), Expect = 2e-04
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +2
Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114
Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517
SGL F I VP + V Q YVI
Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 47.6 bits (108), Expect = 3e-04
Identities = 34/88 (38%), Positives = 47/88 (53%)
Frame = +2
Query: 254 IPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 433
+ L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 434 PSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
SGL F VP + V + YVI
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSR-YVI 95
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 46.4 bits (105), Expect = 7e-04
Identities = 34/109 (31%), Positives = 53/109 (48%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + + ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
+ L SGL + VP + V Q VI + K+P+H
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRV-HQKLVIA-TSTRIDISNVKVPEH 162
Score = 38.3 bits (85), Expect = 0.19
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +3
Query: 207 VVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSDPT*R*ELFAFS 386
V+ K+IGG+KNGGTR + P+ + H + + P R L +
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQ----KRFHRRLVNNKNPPKIRKSLQPGT 99
Query: 387 SLVDM----QARGLYLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISLRQLQ 554
L+ + + + + LL+ + LLV+GP N PLR + ++ TSTRI + ++
Sbjct: 100 ILILLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVH-QKLVIATSTRIDISNVK 158
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 46.0 bits (104), Expect = 0.001
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +2
Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
G + +P K+ +YP +K + K + +RP++K GT+ ILLAG G RVV+
Sbjct: 34 GYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV 92
Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
+ L SG + + +P V Q YVI
Sbjct: 93 LKQLDSGQLLVTGPYAVNRIPLTRV-DQRYVI 123
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 341 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
R++R ++++G V I+L G+H GKR ++ +L SGL + + VP K V P+ ++
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIV 126
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 43.2 bits (97), Expect = 0.007
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
+R ++ GTV I+LAGR AGKRVV + L SGL F + VP + I Q YVI
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRR-IDQRYVI 142
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 41.5 bits (93), Expect = 0.021
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 320 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKA 493
RP K +R P + GTV ILLAGR GKRVVL+ L G+ F I VP +
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 494 VIPQPYVI 517
V + YVI
Sbjct: 84 VNAR-YVI 90
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 40.7 bits (91), Expect = 0.036
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 350 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSY 457
+P +K G VCI+L GRHAGK+ V+V LP SY
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALPHNERGSY 38
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 39.5 bits (88), Expect = 0.084
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLPFSYWTFCIQFVPAKAVIPQPYVI-R 520
+R L GTV I+LAGRH GKRVV + LP SGL I P + I Q +VI
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRR-IGQAFVIAT 125
Query: 521 HLHQNFTSATSKLPKH 568
L N + K+P+H
Sbjct: 126 SLKVNVSGV--KIPEH 139
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 350 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 445
RP+LK+GTV I++ G H GKR V+V +G+
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGI 84
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 37.9 bits (84), Expect = 0.26
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Frame = +2
Query: 248 QNIPLKRRK----SFYPTQEK----IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHA 403
Q++P K+R ++Y + ++ +R RP + +R+I P G V ILL+GR
Sbjct: 19 QSMPAKKRSVRIGNWYKSDDEKVHFVRKRKAPRPAT--LRKIVP----GQVLILLSGRFQ 72
Query: 404 GKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVI 517
GKRVV + L SGL F I VP K V YVI
Sbjct: 73 GKRVVFLKQLKSGLLLVTGPFKINGVPLKRV-NSAYVI 109
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 36.3 bits (80), Expect = 0.78
Identities = 28/85 (32%), Positives = 45/85 (52%)
Frame = +2
Query: 263 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 442
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 443 LPFSYWTFCIQFVPAKAVIPQPYVI 517
F + VP + V + YVI
Sbjct: 62 TLLISGPFKVNGVPLRRVNAR-YVI 85
>UniRef50_A4JKJ0 Cluster: Diguanylate cyclase; n=1; Burkholderia
vietnamiensis G4|Rep: Diguanylate cyclase - Burkholderia
vietnamiensis (strain G4 / LMG 22486)
(Burkholderiacepacia (strain R1808))
Length = 413
Score = 33.9 bits (74), Expect = 4.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 377 CILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVI 499
C GR A V++V +LP G+ YW + + +P + ++
Sbjct: 106 CARFLGRPAHWPVLMVSLLPLGIALVYWRYAVDSIPLRVLV 146
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 4.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 245 NQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 364
N+ LK SF P + + ASS GRP K +R+R LK
Sbjct: 132 NREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 432 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 298
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 33.5 bits (73), Expect = 5.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 353 PNLKIGTVCILLAGRHAGKRVVLVGIL 433
P +++G VCI AGR AGK V+V IL
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDIL 28
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 33.1 bits (72), Expect = 7.3
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +2
Query: 371 TVCILLAGRHAGKRVVLVGILPSGL 445
TV I+L GRH GKRVV + L SGL
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGL 37
>UniRef50_A6SKX3 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 453
Score = 33.1 bits (72), Expect = 7.3
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +2
Query: 272 KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKI---GTVCI-LLAGRHAGKRVVLVGILPS 439
K P+ I G P + HV +R + + G++C+ L+A A VV +
Sbjct: 14 KESRPSFIGIEEEKGEVPIAGHVEELRKDFSVWSLGSLCLCLMATWEALSSVVAAALANG 73
Query: 440 GLPFSYWTFCIQFVPAKAV 496
G P ++ +CI + + A+
Sbjct: 74 GAPCLFYNYCISLIGSLAI 92
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 33.1 bits (72), Expect = 7.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 243 GTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
G + Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 237 GFQKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_Q5FNA8 Cluster: Putative sensory transduction histidine
kinase; n=1; Gluconobacter oxydans|Rep: Putative sensory
transduction histidine kinase - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 585
Score = 32.7 bits (71), Expect = 9.6
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILPS-GLPFSYWTFCIQFVPAKAVIPQPYVIRH 523
IR +L +G + + L G R+ LV L L + W F P + P IRH
Sbjct: 270 IRVSLIVGLLVLELMAVALGARLFLVDPLEKLALAVADWRKGAAFAP-RISHSIPLEIRH 328
Query: 524 LHQNFTSATSKLPKHFQ 574
L + F AT +L KH Q
Sbjct: 329 LEKAFLRATRRLSKHEQ 345
>UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1427
Score = 32.7 bits (71), Expect = 9.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 204 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
T++ K I NG T PS + STP R S P++ S +AGS
Sbjct: 988 TLLQKSISNNSNGSTSVLPS-IAEASTPTRAGSRPYIARGPSRRRHAGS 1035
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,287,302
Number of Sequences: 1657284
Number of extensions: 13999894
Number of successful extensions: 36130
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 34778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36085
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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