Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    39   8e-04
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.17 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.7  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   4.8  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.4  
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy...    25   8.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.5  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +2

Query: 344 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 445
           ++R +L  GTVCILLAGR  GKRVV++  L   L
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQLEDTL 80


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 426 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 292
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 204 TVVVKQIGGEKNGGTRTYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 350
           T  V + G      T TYPS+  S +T     S  H  + HS+S  + S
Sbjct: 593 TSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSS 641


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 565 FWQF*SCRSEILVEVPNHIRLRNNGLSGHEL 473
           FW F S    + +E+PN I   N   S H +
Sbjct: 174 FWDFRSSDKFMSIEIPNQITCMNWSKSNHRM 204


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 170 FANELVFSLLVEHLGFGETHHSVAQIIVPGFFRRFFLSQPTCRCGSRLGRRF 15
           F   L+F+L    +G G    ++  +++  FF+ FF S P   CG  L   F
Sbjct: 169 FCTLLMFTLF--QIG-GGCAQNIWTLVILRFFQGFFGSTPLSNCGGTLSDLF 217


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +3

Query: 255 YPSNVGSPST-----PLRRKSVPHLVAVHSASMY 341
           Y SNV SPS      P R  ++  L+ VHS  MY
Sbjct: 96  YVSNVPSPSDVFLRIPAREATLEELLQVHSQEMY 129


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 80  FFRRFFLSQPTCRC 39
           F RR F S+P+C+C
Sbjct: 626 FLRRLFSSEPSCKC 639


>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  STKKPRNYDLGNGVMRFSKSKMFHKKAKY 155
           S K+P+N D+ + +++    K   KK+KY
Sbjct: 249 SKKRPQNSDITSSLLKKPNRKQATKKSKY 277


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 69  STKKPRNYDLGNGVMRFSKSKMF 137
           +TK PRN+ L N ++RFS   +F
Sbjct: 289 NTKGPRNFVLENHLVRFSSLYIF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,467
Number of Sequences: 5004
Number of extensions: 56798
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)