Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    48   6e-06
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    46   2e-05
05_03_0143 - 8873364-8873834,8873909-8874010                           32   0.54 
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310...    30   1.7  
02_02_0470 - 10700092-10700505                                         30   2.2  
10_08_0951 - 21769342-21769752                                         29   5.1  
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380...    28   6.7  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = +2

Query: 284 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFSY 457
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGL    
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 458 WTFCIQFVPAKAVIPQPYVI 517
             F I  VP + V  QPYVI
Sbjct: 131 GPFKINGVPIRRV-NQPYVI 149


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +2

Query: 278 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLPFS 454
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGL   
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 455 YWTFCIQFVPAKAVIPQPYVI 517
              F I  VP + V  Q YVI
Sbjct: 107 TGPFKINGVPIRRV-NQAYVI 126


>05_03_0143 - 8873364-8873834,8873909-8874010
          Length = 190

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 377 CILLAGRHAGKRVVLVGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSAT 550
           C+LLAG    +RV+ +  LP+ LP   W   +  + A   +P P V   L  + +S+T
Sbjct: 109 CLLLAGGGDWRRVLHLP-LPTSLPRQCWRCPVVLIDAGKPLPSPAVSSSLSPHSSSST 165


>05_07_0258 -
           28729620-28729782,28730193-28730339,28730808-28731032,
           28731148-28731178,28731424-28731940
          Length = 360

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -2

Query: 460 PVTKRQTAGQNSNKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGV 281
           P T R  A    N Y     + TS + A ++ L   +DP+    ++ +T  G   L +  
Sbjct: 135 PNTVRDHASFAFNSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTST 193

Query: 280 EGLPTFEGYVLVPPFF---SPPI 221
              P F GY   PP F   SPP+
Sbjct: 194 PTNPAFGGYDNSPPGFGNNSPPL 216


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSG 442
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>10_08_0254 +
           16236689-16236793,16237760-16237808,16237988-16238076,
           16238178-16238234,16238684-16238746,16238828-16238893,
           16239520-16239606,16239691-16239784,16240351-16240673,
           16241022-16241048,16241065-16241145,16241445-16241476,
           16242126-16242266,16242455-16242516,16243170-16243387
          Length = 497

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 520 PNHIRLRNNGLSGHELNAKGPVTKRQTAGQNSNKYNPLAC 401
           P  IR +N G+SG ++  K  + + +T  +  N  +  AC
Sbjct: 403 PKRIRRQNEGVSGEQVEKKKAMHEERTGERKCNGGSAFAC 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019,110
Number of Sequences: 37544
Number of extensions: 416098
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)