Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-P...    74   2e-13
AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p pro...    73   4e-13
AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-P...    73   4e-13
AY070827-1|AAL48449.1|  135|Drosophila melanogaster AT27980p pro...    30   3.8  
AE014297-3837|AAF56495.1|  135|Drosophila melanogaster CG4759-PA...    30   3.8  

>AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-PA,
           isoform A protein.
          Length = 243

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 43/105 (40%), Positives = 57/105 (54%)
 Frame = +2

Query: 254 IPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 433
           +P+K+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL+ +L
Sbjct: 60  VPIKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 119

Query: 434 PSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
            SGL      F +   P + V  Q YVI            K+P+H
Sbjct: 120 ASGLLLVTGPFALNSCPLRRV-SQRYVI-GTSSKVDLGAFKVPEH 162


>AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p
           protein.
          Length = 262

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 44/109 (40%), Positives = 58/109 (53%)
 Frame = +2

Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
           G + + LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL
Sbjct: 75  GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134

Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
           + +L SGL      F +   P + V  Q YVI            K+P+H
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRV-SQRYVI-GTSSKVDLGAFKVPEH 181



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
 Frame = +3

Query: 63  KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 242
           KK  K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG KNG
Sbjct: 15  KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74

Query: 243 GTRTYPSNVGSPSTPLRR--KSVPHLVAVHSASMYAGSDPT*R*ELFAFSSLVDMQARGL 416
           G RT        S P +   K  P              + T    L   +     Q + +
Sbjct: 75  GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAG--RHQGKRV 132

Query: 417 YLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISL 542
            LL+   +  LLVTGPFA NSCPLR +   R   GTS+++ L
Sbjct: 133 VLLKVLASGLLLVTGPFALNSCPLRRV-SQRYVIGTSSKVDL 173


>AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-PB,
           isoform B protein.
          Length = 262

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 44/109 (40%), Positives = 58/109 (53%)
 Frame = +2

Query: 242 GNQNIPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 421
           G + + LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL
Sbjct: 75  GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134

Query: 422 VGILPSGLPFSYWTFCIQFVPAKAVIPQPYVIRHLHQNFTSATSKLPKH 568
           + +L SGL      F +   P + V  Q YVI            K+P+H
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRV-SQRYVI-GTSSKVDLGAFKVPEH 181



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
 Frame = +3

Query: 63  KKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNG 242
           KK  K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG KNG
Sbjct: 15  KKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNG 74

Query: 243 GTRTYPSNVGSPSTPLRR--KSVPHLVAVHSASMYAGSDPT*R*ELFAFSSLVDMQARGL 416
           G RT        S P +   K  P              + T    L   +     Q + +
Sbjct: 75  GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAG--RHQGKRV 132

Query: 417 YLLEFCPAVCLLVTGPFAFNSCPLRPLFLNRM*FGTSTRISL 542
            LL+   +  LLVTGPFA NSCPLR +   R   GTS+++ L
Sbjct: 133 VLLKVLASGLLLVTGPFALNSCPLRRV-SQRYVIGTSSKVDL 173


>AY070827-1|AAL48449.1|  135|Drosophila melanogaster AT27980p
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLP 448
           +R  +K G + I+L+GR+AG++ ++V     G P
Sbjct: 1   MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTP 34


>AE014297-3837|AAF56495.1|  135|Drosophila melanogaster CG4759-PA
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLP 448
           +R  +K G + I+L+GR+AG++ ++V     G P
Sbjct: 1   MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTP 34


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,633,448
Number of Sequences: 53049
Number of extensions: 681883
Number of successful extensions: 1579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)