Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    40   0.002
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +2

Query: 347 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLPFSYWTFCIQFVPAKAVIPQPYVI-R 520
           +R  L  GTV I+LAGRH GKRVV +  LP SGL        I   P +  I Q +VI  
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRR-IGQAFVIAT 125

Query: 521 HLHQNFTSATSKLPKH 568
            L  N +    K+P+H
Sbjct: 126 SLKVNVSGV--KIPEH 139



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 84  RNYDLGNGVMRFSKSKMFHKKAKYK 158
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 412
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  QACCRTCRWVD*EKIYEKTQEL*SGQRSDAFLQIQDVPQE 145
           Q  C TC WVD E+ Y     L    R+   ++IQ+VP +
Sbjct: 360 QGACVTCSWVDCEETYHVCCAL----RAGMTVRIQEVPND 395


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  QACCRTCRWVD*EKIYEKTQEL*SGQRSDAFLQIQDVPQE 145
           Q  C TC WVD E+ Y     L    R+   ++IQ+VP +
Sbjct: 401 QGACVTCSWVDCEETYHVCCAL----RAGMTVRIQEVPND 436


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 441 PLGRIPTSTT--LLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS*VG*KDFL 268
           P+  I ++TT  LL  CL A    T+P F++  I   C   G    +  + S    KD L
Sbjct: 132 PMKIIESATTVLLLHKCLEAPDSPTLPNFQVKTIGGKCFSTGELCPQVDVLSIGRLKDML 191

Query: 267 RLRGMFW 247
           R + + W
Sbjct: 192 REQELRW 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,621
Number of Sequences: 27780
Number of extensions: 335325
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)