Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0158
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces ...    28   1.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.5  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.8  

>SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 122

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 19 PINRNALPCKSKFYMFFHNERTFLS 93
          P  R ALP + +  +FF NERTFLS
Sbjct: 11 PGKRIALPVRVEPKVFFANERTFLS 35


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 251 SLVWYGLIFL**IISVLDLTFFYSSTA*IFSNFLL 355
           S + Y LIF     S+LDLTF Y   A + S FLL
Sbjct: 648 SSICYSLIFS---HSLLDLTFQYVDIASLLSQFLL 679


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 319 FIDSLNLF*FPITCKVCYFLNF 384
           FI+S+  F   +TC VC FL +
Sbjct: 323 FINSVKTFGSLLTCSVCLFLTY 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,117
Number of Sequences: 5004
Number of extensions: 53232
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)