Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0158
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -1

Query: 319 IKESKI*HRNDSLKKDEAVPNQTYQCRTRIESPTFASKYDKISS*MTLFSSVSLLTWYF 143
           I E K   RNDS +    V   T Q  T  +    A   DK+S     FS + L   Y+
Sbjct: 321 IDEFKTPMRNDSERNRSPVRPATVQYDTCCQGRATAIYIDKVSRFFFPFSFLILNVVYW 379


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 289 DSLKKDEAVPNQTYQCRTRIESPTFASKYDKISS 188
           D   K+  +P+      T +  P F   Y KI S
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAFYMLYQKILS 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,258
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)