Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0158
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g32621.1 68418.m03884 expressed protein contains Pfam profile...    28   5.1  
At3g15310.1 68416.m01933 expressed protein                             28   6.7  
At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase f...    28   6.7  
At5g13950.1 68418.m01631 expressed protein                             27   8.9  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    27   8.9  
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to...    27   8.9  
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to...    27   8.9  

>At5g32621.1 68418.m03884 expressed protein contains Pfam profile
           PF04827: Protein of unknown function (DUF635)
          Length = 625

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 292 NDSLKKDEAVPNQTYQCRTRIESPTFASKYDKISS*MTLF 173
           ND    +   P QT++ R R++ P F    D++SS +  F
Sbjct: 61  NDYFSDNAIFPPQTFRRRFRMKKPLFLRIVDRLSSELMFF 100


>At3g15310.1 68416.m01933 expressed protein
          Length = 415

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 292 NDSLKKDEAVPNQTYQCRTRIESPTFASKYDKISS*MTLF 173
           ND    +   P QT++ R R++ P F    D++SS +  F
Sbjct: 61  NDYFSDNAIFPLQTFRRRFRMKKPLFLRIVDRLSSELMFF 100


>At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 259

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 274 LSLMNHFCVRSYFLLFIDSLNLF*FPITCKVCYFLNFWVHKD 399
           LS+     +RS  L F +  ++F   I+  VCYFL    H D
Sbjct: 218 LSIFRELHIRSEILFFENGTDVFRAGISSLVCYFLAQIQHPD 259


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 657 KKLFLDMVSSKTSKY*QKKLIDYNRNSLCGIFPN 556
           K  F+D+ S+   +  ++K++  N N+  G FPN
Sbjct: 631 KNCFIDLESNMPEEVDRRKMLQRNANNSFGSFPN 664


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 545 GNTTTGTYDRIWGGLCESKTILA 477
           GN  TG + R+  GLCE+ T+ +
Sbjct: 210 GNNVTGDFSRLSFGLCENLTVFS 232


>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 491

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 654 KLFLDMVSSKTSKY*QKKLI-DYNRNSLCGIFPNMWKREYHDRNL*QDLGRPL 499
           +L L++  +K  K  +   I DYNR S+  +  ++ K   H R    D G+PL
Sbjct: 304 ELTLEISDNKWPKASELSTIWDYNRKSMLNLVASLVKTGVHGRIFSLDKGKPL 356


>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 422

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 654 KLFLDMVSSKTSKY*QKKLI-DYNRNSLCGIFPNMWKREYHDRNL*QDLGRPL 499
           +L L++  +K  K  +   I DYNR S+  +  ++ K   H R    D G+PL
Sbjct: 235 ELTLEISDNKWPKASELSTIWDYNRKSMLNLVASLVKTGVHGRIFSLDKGKPL 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,283,853
Number of Sequences: 28952
Number of extensions: 247221
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)