Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0157
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 33 0.13
U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF068709-8|AAO26015.1| 315|Caenorhabditis elegans Serpentine re... 31 0.69
U41022-1|AAA82338.3| 303|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 30 1.2
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 29 1.6
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine re... 29 2.1
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 28 3.7
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical ... 27 6.5
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 27 6.5
AF036696-1|AAB88351.1| 169|Caenorhabditis elegans Hypothetical ... 27 6.5
Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 27 8.6
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 27 8.6
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 27 8.6
>Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical
protein F26D10.9a protein.
Length = 613
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +2
Query: 449 FVLFWVAWLCMLAGAIAVIVRAPK 520
FVLFW+AW+ M AGAIA++V +PK
Sbjct: 66 FVLFWLAWVLMFAGAIAIVVLSPK 89
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 379 GMTREEVLKYADDPFWVNLRWSLF 450
G+T+E++ KY +DPFW +R LF
Sbjct: 43 GLTKEQLEKYRNDPFWKPVRTILF 66
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +2
Query: 449 FVLFWVAWLCMLAGAIAVIVRAPK--LRARP 535
FVLFW+ WL + A AI ++ +P LRA+P
Sbjct: 101 FVLFWLIWLALFAVAILLVCFSPTCVLRAKP 131
>U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical
protein F20B6.5 protein.
Length = 317
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 183 SGRPKRTSANRRRRYLPTAPKRNYEEGRRGQNHNPGGH 296
+GR KR+S +R+R+ P P+R+ + + ++ GH
Sbjct: 195 TGREKRSSEDRKRQVPPEEPRRSSHQSKTAKSEEQKGH 232
>AF068709-8|AAO26015.1| 315|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 59 protein.
Length = 315
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 238 AVGRYLLLRFAEVRFGRPEFCIRFWYSLVGCNVFILFHLPSI 113
+V R L + FA +F R FC R WY +G ++F+ HLP +
Sbjct: 120 SVHRILTVMFAG-KFER--FCYR-WYPAIGISMFVYSHLPKL 157
>U41022-1|AAA82338.3| 303|Caenorhabditis elegans Hypothetical
protein K08B5.2 protein.
Length = 303
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 423 EGIVSILQYLLSRHPSELPFISIEFNLRVTIPVVPDDIFRIGHVHP 286
E + +LQYLL + +FN+R++ P +P I + HP
Sbjct: 184 ETVSKVLQYLLENEIYLTKCVKAKFNVRLSSPDIPHLIMKFIECHP 229
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NLIQNSGRPKRTSANRRRRYLPTAPKRNYEEGRRGQNHNPGGHVRCEICRR 320
+L N GR R S + LPT+ + ++ RR Q + G H + CRR
Sbjct: 1600 SLSVNDGRSIRDSGPLK---LPTSGRPSFRPYRRPQERSQGSHEAAQACRR 1647
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -3
Query: 490 PGEHAQPGHPEQH---ETATNASSPRRDRQHTSVPPLSSSQ*IAVY*HR-VQSSRHHSCG 323
PG + QPGHP Q N +P D + P S+ AV+ HR V +RH +
Sbjct: 237 PGPNGQPGHPGQDGQPGAPGNDGAPGSDAAYCPCPARSA----AVFRHRNVAVNRHRAVA 292
Query: 322 PRRHISHR 299
+R ++ +
Sbjct: 293 KKRVVAKK 300
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 168 NLIQNSGRPKRTSANRRRRYLPTAPKRNYEEGRRGQNHNPGGHVRCEICRR 320
+L N GR R S + LPT+ + ++ RR Q + G H + CRR
Sbjct: 1600 SLSVNDGRSIRDSGPLK---LPTSGRPSFRPYRRPQERSQGSHEAAQACRR 1647
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +1
Query: 187 VVQNEPRQIEGEDICR------RRRRETMKKEDEAKIITRVDMSD 303
+V + PR + G+D+ + R R+E K+E+E K R+D+ D
Sbjct: 270 MVNDGPRTLTGDDMDKMVSEEERARKEQEKREEEEKAARRIDVED 314
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +1
Query: 187 VVQNEPRQIEGEDICR------RRRRETMKKEDEAKIITRVDMSD 303
+V + PR + G+D+ + R R+E K+E+E K R+D+ D
Sbjct: 270 MVNDGPRTLTGDDMDKMVSEEERARKEQEKREEEEKAARRIDVED 314
>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
protein T04G9.1 protein.
Length = 1610
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 535 RAGPQLGCANNDCNSPGEHA-QPGHPEQHETATNASSPRRDRQHTSVP 395
RA + C ++ NS G +P P H + N S PR QH +P
Sbjct: 250 RAMRLVNCRSHWKNSRGHQPIRPAQPNIHPMSQNYSGPRNAHQHNLLP 297
>AF068709-7|AAO26014.1| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 60 protein.
Length = 317
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 244 FGAVGRYLLLRFAEVRF-GRPE-FCIRFWYSLVGCNVFILFHLPSI 113
F A L R V F G+ E FC R WY +G ++F+ HLP +
Sbjct: 113 FCATAMLSLHRILTVVFAGKFERFCYR-WYPAIGISMFVYSHLPKL 157
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 200 SFWTTGILYQILV*PCRLQRVHPLSLALHQSRDGFSVAP 84
S WT + QILV P RV+P + Q R FS P
Sbjct: 53 SAWTEMMDIQILVTPPTKPRVNPFNSVFRQKRQTFSGLP 91
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 465 TQNNTKQRPTQVHPEGIVSILQYLLSRHPSELPFISIEFNLRVTIPVVPD 316
T+ T P +VH + ++ +YL++ +ELP + I L V + ++ D
Sbjct: 744 TKKQTNFEPLEVHYQAFSAVYKYLIN---NELPSLKILRKLHVLLKILDD 790
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 113 DGGQVKEDEHVATYKAIPESDTE 181
DG V+EDE + ++ +P DTE
Sbjct: 123 DGNPVEEDEEMPAHEDLPSEDTE 145
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 180 NSGRPKRTSANRRRRY-LPTAPKRNYEEGRRGQNHNPG 290
N G+P + RR + P AP R + GR+G NPG
Sbjct: 202 NPGQPGHPGKDGRRGHGSPGAPGRAGQPGRQGAPGNPG 239
>AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical
protein T12B3.2 protein.
Length = 478
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -2
Query: 374 NCRLLASSSIFASPFLWSPTTYFASDMSTRVMILASSSFFI 252
+C L+A + +PFL T+++ ++ V++L S++ I
Sbjct: 401 SCSLIARIGMILAPFLTYANTWWSPAVNVTVIVLGSANLLI 441
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 490 PGEHAQPGHPEQHETATNASSPRRDRQHTS 401
P + QP HP QH+ + +QH S
Sbjct: 520 PQQQQQPQHPHQHQQPASVPMQHHPQQHPS 549
>AF036696-1|AAB88351.1| 169|Caenorhabditis elegans Hypothetical
protein F15B10.3 protein.
Length = 169
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 456 NTKQRPTQVHPEGIVSILQYLLSRHPSELPFISIEFNLRVTIPV 325
N + P + GI+ ++ +L SE P + N++VT P+
Sbjct: 11 NDSEEPVTLRDTGIIMLVPVILRSVQSEFPDFENQDNVKVTSPL 54
>Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical
protein T03E6.3 protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 78 RCRSHGKTVSRLMEGK*KRMNTLQPTRLYQNLI 176
+C+ G T+ ++ G+ K NTL+ ++ Q+L+
Sbjct: 58 KCKEAGLTIEKIQVGRDKHSNTLELSKNRQSLL 90
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 245 LRRRRQISSPSICRGSF 195
LRRR +ISSP I R SF
Sbjct: 514 LRRRAEISSPKILRSSF 530
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 245 LRRRRQISSPSICRGSF 195
LRRR +ISSP I R SF
Sbjct: 514 LRRRAEISSPKILRSSF 530
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 231 PTAPKRNYEEGRRGQNHNPGGHVRCEI 311
PT+PK+NYE+ + + N G + CEI
Sbjct: 323 PTSPKQNYEKTYKDGDSNQTGGI-CEI 348
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 377 VNCRLLASSSIFASPFLWSPTTYFASDMSTRVMILASSSFFIV 249
++C+ S + S LW+P F + ST+V +S+ ++
Sbjct: 99 ISCKTNLSLDSYVSERLWTPNVCFVNSKSTQVHKSPASNILLI 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,006,105
Number of Sequences: 27780
Number of extensions: 333002
Number of successful extensions: 1358
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -