Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0156
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8227| Best HMM Match : No HMM Matches (HMM E-Value=.)              136   1e-32
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)                 32   0.46 
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  

>SB_8227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score =  136 bits (329), Expect = 1e-32
 Identities = 67/106 (63%), Positives = 85/106 (80%)
 Frame = +3

Query: 312 MEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMK 491
           MEGA+IH ENAIRQKNQ+LN++RMS+R+DAV+ RVQTA+T ++VT+SM GVVK+MDAA+K
Sbjct: 1   MEGAKIHGENAIRQKNQSLNFMRMSSRIDAVAQRVQTAVTMKQVTSSMGGVVKSMDAALK 60

Query: 492 FNELREISTLMDKFESQFEDLDVQSSYIGGMRCSQTTDNLXVPPGR 629
              L ++S LMDKFE QFEDLDVQS+ +     S TT  L VP G+
Sbjct: 61  SMNLEKVSALMDKFEKQFEDLDVQSAAMDNAMSSTTT--LTVPQGQ 104


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/86 (32%), Positives = 48/86 (55%)
 Frame = +3

Query: 306 GNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAA 485
           G M+  RI A++ +R +     ++ M A + AVS ++QT  +   +  +M GV KAM   
Sbjct: 56  GQMDAVRIMAKDLVRTRRYVKKFILMKANIQAVSLKIQTLRSNNAMAQAMKGVTKAMATM 115

Query: 486 MKFNELREISTLMDKFESQFEDLDVQ 563
            +  +L EI  +M +FE Q E +D++
Sbjct: 116 NRQLKLPEIQKIMMEFEKQSEIMDMK 141


>SB_17194| Best HMM Match : Ectatomin (HMM E-Value=3.8)
          Length = 132

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 510 ISTLMDKFESQFEDLDVQSSYIGGMRCSQTT 602
           IS  M+KFE  FEDLDV +  + G   + TT
Sbjct: 1   ISATMEKFEGLFEDLDVNTQVMEGSMGAATT 31


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +3

Query: 345 IRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAM--------DAAMKFNE 500
           I+ + + +N LR+SAR D ++S    AL   +  N + GVVK          DA     E
Sbjct: 439 IKPRWETIN-LRLSAREDQIASVQPLALAYEEALNDVEGVVKGAETHLSNLGDAPSGKQE 497

Query: 501 LREISTLMDKFESQFEDLD 557
           L  ++ +++  +   +DL+
Sbjct: 498 LHALNGVLNTVDKHHQDLE 516


>SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 477 DAAMKFNELREISTLMDKFESQFEDLDVQSSYIGGMRCSQTTDNLXVPPGRR 632
           DAA+++++  + ST    + S   D ++  +  G +   +TT+ L +P G R
Sbjct: 201 DAALEYSDYYDFST---SYPSDNPDKEIDETASGTLSVDETTNELCLPSGAR 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,393
Number of Sequences: 59808
Number of extensions: 262831
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)