Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0156
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical ...   122   2e-28
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    56   2e-08
Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    38   0.005
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    30   1.2  
AF022979-1|AAO26005.1|  198|Caenorhabditis elegans Hypothetical ...    28   4.9  

>AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical
           protein F23C8.6 protein.
          Length = 205

 Score =  122 bits (294), Expect = 2e-28
 Identities = 56/89 (62%), Positives = 76/89 (85%)
 Frame = +3

Query: 294 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 473
           AI+KGN E A++HAENAIR+KN+A+NY++M+AR+DAV++RVQTA T ++VT SM+GVVKA
Sbjct: 45  AIKKGNKEVAQVHAENAIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVVKA 104

Query: 474 MDAAMKFNELREISTLMDKFESQFEDLDV 560
           M++AMK   L ++  LMD+FE  FEDLDV
Sbjct: 105 MESAMKSMNLEKVQQLMDRFERDFEDLDV 133



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +1

Query: 163 LGNEMSSSAMEKHLFNLKFA 222
           +G   SS A+EKHLF+LKFA
Sbjct: 1   MGAGESSMALEKHLFDLKFA 20


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/93 (29%), Positives = 52/93 (55%)
 Frame = +3

Query: 300 QKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMD 479
           +K  M+  ++ A++ +R +     ++ M A + AVS +VQT  +   + ++M GV KAM 
Sbjct: 52  KKNQMDSVKVMAKDLVRTRRYIKKFIVMKANIQAVSLKVQTLKSQDAMASAMKGVTKAMQ 111

Query: 480 AAMKFNELREISTLMDKFESQFEDLDVQSSYIG 578
           +  +   L +I  +M +FE Q E +D++   +G
Sbjct: 112 SMNRQLNLPQIQKIMMEFEKQSEIMDMKEEVMG 144


>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 26/108 (24%), Positives = 51/108 (47%)
 Frame = +3

Query: 303 KGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMDA 482
           KG+ + AR  A+  ++ +NQ    + MSAR+  V ++     +  K+ ++M   VK M A
Sbjct: 51  KGHNDAARHLAKQLVQLRNQKTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKA 110

Query: 483 AMKFNELREISTLMDKFESQFEDLDVQSSYIGGMRCSQTTDNLXVPPG 626
                 L +++  M +F+   E + +    +     + T D++   PG
Sbjct: 111 MNAQMPLEKVAANMREFQMAQEKMGLTEEMM-----NDTLDSILDAPG 153


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 459 GVVKAMDAAMKFNELREIST-LMDKFESQFEDLDVQSSYIGGMRCSQTTD 605
           G+V    AA  F  +   S  L D  E   E++ + SSY GG+ C ++TD
Sbjct: 328 GIVGGGQAAGFFAAVFSSSLDLKDSGEKNAENVVISSSYFGGLHCWKSTD 377


>AF022979-1|AAO26005.1|  198|Caenorhabditis elegans Hypothetical
           protein T02B11.3a protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 441 VTNSMAGVVKAMDAAMKFNELREISTLMDKFESQFED 551
           ++NSM+  + AM+    FN   ++  L+DK  + F++
Sbjct: 75  ISNSMSKAIPAMNLYSGFNSCTDLMALLDKMMTPFKN 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,097
Number of Sequences: 27780
Number of extensions: 207247
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)