Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0156
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 537 SQFEDLDVQSSYIGGMRCSQT 599
           S +ED + +S +I G+R  QT
Sbjct: 339 SHYEDGETKSRFISGIRSEQT 359


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 39  ICLNNSIITFSRFSNSVIY*ISVCWVLLPIFC 134
           + ++N ++ F      VI      WVL P+FC
Sbjct: 94  LAISNFLMMFCMSPPMVINCYYETWVLGPLFC 125


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 73  VFLIL*FTRYQFVGYYYLFFVC 138
           +FL++ F  +  + +  LFF C
Sbjct: 135 IFLLIRFKSFSLLNFNLLFFNC 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,314
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)