Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0156
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domai...   101   4e-22
At1g73030.1 68414.m08445 SNF7 family protein contains Pfam domai...    99   1e-21
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    55   4e-08
At1g69325.1 68414.m07952 remorin family protein contains Pfam do...    29   3.5  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    27   8.1  

>At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 203

 Score =  101 bits (242), Expect = 4e-22
 Identities = 46/111 (41%), Positives = 77/111 (69%)
 Frame = +3

Query: 294 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 473
           AI+KGNM+GARI+AENAIR++++ +NYLR+S+R+DAV +R+ T      +T SM  +VK+
Sbjct: 42  AIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKS 101

Query: 474 MDAAMKFNELREISTLMDKFESQFEDLDVQSSYIGGMRCSQTTDNLXVPPG 626
           +++++    L+++S  MD FE QF +++VQ+ ++       T  +L  P G
Sbjct: 102 LESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNAMAGST--SLSTPEG 150


>At1g73030.1 68414.m08445 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 203

 Score =   99 bits (238), Expect = 1e-21
 Identities = 45/111 (40%), Positives = 77/111 (69%)
 Frame = +3

Query: 294 AIQKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKA 473
           AI+KGNM+GARI+AENAIR++++ +NYLR+++R+DAV +R+ T      +T SM  +VK+
Sbjct: 42  AIEKGNMDGARIYAENAIRKRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKS 101

Query: 474 MDAAMKFNELREISTLMDKFESQFEDLDVQSSYIGGMRCSQTTDNLXVPPG 626
           +++++    L+++S  MD FE QF +++VQ+ ++       T  +L  P G
Sbjct: 102 LESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMENAMAGST--SLSTPEG 150


>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 26/93 (27%), Positives = 53/93 (56%)
 Frame = +3

Query: 300 QKGNMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSMAGVVKAMD 479
           ++G M   ++ A++ IR ++Q   + ++ +++  VS R+QT  +T+ +  +M GV KAM 
Sbjct: 53  KQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMG 112

Query: 480 AAMKFNELREISTLMDKFESQFEDLDVQSSYIG 578
              +   L  +  +M +FE Q E +++ S  +G
Sbjct: 113 QMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMG 145


>At1g69325.1 68414.m07952 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 120

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 309 NMEGARIHAENAIRQKNQALNYLRMSARVDAVSSRVQTALTTRKVTNSM 455
           ++E  ++ A    R +N+ +  +  SAR  A  SR++  L  ++  N M
Sbjct: 61  SVEKTKLKATQRFRDENERIEIIVASARAHAYESRIKEELKVKEKANLM 109


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 554 GCPVVLHWRNAMFTNYGQLTXSPRET 631
           GCP+V HWRN       Q   S  ET
Sbjct: 400 GCPLVEHWRNQQIVRGYQRLVSHPET 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,770
Number of Sequences: 28952
Number of extensions: 184869
Number of successful extensions: 373
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)