Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0154
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    63   3e-11
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   6.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.2  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   8.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   8.2  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 30/72 (41%), Positives = 44/72 (61%)
 Frame = +1

Query: 295 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 474
           +E +L +I+G+   IE Q  +++ AN N + L  MR+ A AMK   + +D DKV  IMD 
Sbjct: 70  HENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDK 129

Query: 475 IAEQHDISREIT 510
           I +Q  IS EI+
Sbjct: 130 IRDQQTISEEIS 141



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 134 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKTKELPLQLSSGRRDTRSNLL 313
           TT + I + +E   L  KK+E LE++I  + + ARK+ T  K L L     ++   + L+
Sbjct: 16  TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELV 75

Query: 314 K 316
           K
Sbjct: 76  K 76


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 193 RVFGKEDRFRSTDSQETWH 249
           + F  E RFRSTD    WH
Sbjct: 927 KTFAAEIRFRSTDGHYRWH 945


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 155 KLRETEELLIKKQEFLEKKIDLEVQTARKHGTKTKE 262
           KL E+ + LIKKQE ++  ++  +QT ++   K++E
Sbjct: 669 KLEESNKSLIKKQEDVD-SLEKNIQTLKEDLRKSEE 703


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 149 IQKLRETEELLIKKQEFLEKKIDLEVQ---TARKHGTKTKELPLQLSSGR 289
           I +L + EE +   +  L+  ID  V+   T +   + T  LPL+L +GR
Sbjct: 553 ISRLLDIEESIWSPRFGLKGNIDATVEVVLTEKPESSSTLTLPLELKTGR 602


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 161 RETEELLIKKQEFLEK-KIDLEVQTARKHGTK 253
           ++TEEL ++KQ F+E+ ++ +  Q    H  K
Sbjct: 608 KDTEELTLQKQSFIERDRMQMISQMRNMHDNK 639


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 152 QKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKTKE 262
           Q+LRE EE  I ++    +K+D E +  R+     KE
Sbjct: 691 QRLREEEEKRILEERKRREKLDKEEEERRRRELLEKE 727


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 454 VHDIMDDIAEQHDISREITRRSVTMWP 534
           VH IM  IAE+H++  E T  +   WP
Sbjct: 108 VHSIMRHIAEKHNVPLE-TMYTTIGWP 133


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 143 EAIQKLRETEELLIKKQEFLEK----KIDLEVQTARK 241
           E  +KLRE E++  KK + LEK    +I L+ Q  RK
Sbjct: 108 EQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,953
Number of Sequences: 5004
Number of extensions: 41825
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)