Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0154
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 50 2e-06
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 45 5e-05
05_01_0488 - 4070506-4072277,4072455-4072557 31 0.90
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108... 30 1.6
02_05_0794 + 31789186-31789330,31789613-31789755 29 2.7
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 29 3.6
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 29 3.6
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 28 4.8
07_03_0632 - 20112297-20116562 28 6.3
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 8.4
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +1
Query: 295 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 474
YE+Q+ Q+ +I Q LEGA + ++ +R A+AMK HK ++D V MD+
Sbjct: 74 YEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDVDKTMDE 133
Query: 475 IAEQHDISREI 507
I + + R+I
Sbjct: 134 INDNMENMRQI 144
Score = 34.3 bits (75), Expect = 0.073
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +2
Query: 134 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKTK 259
T +I KL ET E+L KK+ L KK +LEV+ A K TK K
Sbjct: 19 TALASIDKLSETLEMLEKKENLLVKKANLEVEKA-KTFTKAK 59
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +1
Query: 295 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 474
YE+Q+ Q+ +I Q LE A + ++ +R A AMK K ++D V MD+
Sbjct: 835 YEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDE 894
Query: 475 IAEQHDISREI 507
I EQ + ++I
Sbjct: 895 INEQTENMKQI 905
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 149 IQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKTKELPLQ 274
+ KL ET ++L KK++ LEKK E++ A++ K K +Q
Sbjct: 785 LDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRAAIQ 827
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 30.7 bits (66), Expect = 0.90
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Frame = +1
Query: 304 QLTQIDGTLTQIEAQREALEGAN-TNAQVLNTMREA-ANAMK-----LAHKDIDVDKVHD 462
+ + + L ++++++EALE N ++ ++E+ +A K LAH+D ++DK
Sbjct: 229 ETSSLQKDLDEVKSEKEALEAVVLVNKDEIDRLKESMVSAAKQFEVELAHRDTEIDKCKQ 288
Query: 463 IMDDIAEQ--HDIS 498
++ ++E+ HDIS
Sbjct: 289 ELEVLSEKYLHDIS 302
>11_01_0130 -
1079515-1079685,1079847-1079961,1080237-1080328,
1080435-1080520,1080957-1081056,1082180-1082210,
1082416-1082471
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 164 ETEELLIKKQEFLEKKIDLEVQTARKHGTKTK 259
ET E+L KK+ FL+KK EV+ A+ + TK K
Sbjct: 29 ETLEMLEKKECFLQKKASAEVEKAKDY-TKAK 59
>02_05_0794 + 31789186-31789330,31789613-31789755
Length = 95
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 337 IEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVH 459
+ + AL+ + A+ L ++R +NA LA + +D DK+H
Sbjct: 1 MSVETAALQLSGEKARALTSIRRYSNAPILAAQRLDTDKIH 41
>12_01_0133 -
1011442-1011609,1011792-1011906,1012188-1012279,
1012384-1012469,1012989-1013088,1014139-1014333
Length = 251
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 164 ETEELLIKKQEFLEKKIDLEVQTARKHGTKTK 259
+T E+L KK+ FL+KK EV+ A+ + TK K
Sbjct: 65 QTLEMLEKKECFLQKKASAEVERAKDY-TKAK 95
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 221 EVQTARKHGTKTKELPLQLSSGRRDTRSNLLK*MGPSLRLRPKGKR*KVPIPMPK 385
EV+ ++K G TK+ L+L R + P R+RPKGK+ K P P+
Sbjct: 81 EVEPSKKRGYLTKKR-LKLQRKREKKKRKEANKNDPR-RIRPKGKKIKQKFPTPE 133
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 441 NVFVCELHGISCLAHSVQY 385
N+ CELH SCL H++Q+
Sbjct: 163 NLPACELHHFSCLLHTMQH 181
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 134 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKTKELPL 271
T E I +L E+ + K + L K L + A++ GTK +ELPL
Sbjct: 1140 TVEEEINRLFSNWEIRLGKDQSLVLKSGL-LNIAKELGTKRRELPL 1184
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 301 KQLTQIDGTLTQIEAQREALEGANTNAQVLN-TMREAANA 417
K++ + T+TQ++ + LEG +TN + N +R+ A A
Sbjct: 1825 KKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQATA 1864
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,119
Number of Sequences: 37544
Number of extensions: 263400
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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