Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0153
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   5.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   5.9  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.8  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 278 IQSINKSTSAICSTFFHYINVTNP 349
           I  +NKS  AICS   HY  + NP
Sbjct: 263 ISLVNKSVQAICSFAEHYNLLRNP 286


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 323 FHYINVTNPFLVKISFI*LRKTSLIMLSLCIHLI 424
           F  I +T PF+  ISF+ LR  S + +S+ +  +
Sbjct: 147 FSPIIITLPFIALISFLHLRSLSSLTVSIWLRFL 180


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 110 NC*SLFVN*WSYLSHIAHV*NLQIVRNLSSSALLYVRELCL 232
           +C  L +  +SY  H+ ++  ++I+ N     L +VRE CL
Sbjct: 210 HCAVLIMKQFSYSHHMGYISEIRILHNEYEKLLKFVRE-CL 249


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 459 LRSSAFSVYSLPCKSMRFIY 518
           L  S F++YSLPC+ +RF++
Sbjct: 30  LLESQFALYSLPCQ-LRFVH 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,285
Number of Sequences: 5004
Number of extensions: 40148
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)