Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0153
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.6  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 19  VPVQIQKRKNKLLDAN 66
           V VQIQ  KN+L +AN
Sbjct: 314 VTVQIQPLKNELFNAN 329


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 259 IASIQLAYRKAQLPHI*QGTA*KIPDNLQVLNMGNMAQV 143
           + ++ + Y   QLP   +GT   +  N+ + +MG ++++
Sbjct: 41  LENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSEL 79


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 55  LDANAINKLQKGDKGT 102
           LD N + ++QKG+K T
Sbjct: 87  LDGNKLIQVQKGEKQT 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,480
Number of Sequences: 438
Number of extensions: 2769
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)