Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0153
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3...    28   3.8  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    27   6.7  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    27   6.7  
At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ...    27   6.7  
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    27   6.7  

>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
           similar to auxin transport protein [Arabidopsis
           thaliana] gi|5817301|gb|AAD52695
          Length = 640

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 FHYINVTNPFLVKISFI*L-RKTSLIMLSLCIHLINWT 433
           FH+I+  NP+ + + FI       +IMLSL +   N+T
Sbjct: 56  FHFISTNNPYAMNLRFIAADTLQKIIMLSLLVLWANFT 93


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 175 ADCQESFKQCLAICEGVVPYGKLIEWKQFHQKL 273
           + CQ+SF  C   C+GV P       K+F  ++
Sbjct: 172 SSCQKSFVACKMRCDGVPPSSSTAGRKEFQDQV 204


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 181 CQESFKQCLAICEGVVPYGKLIEWKQFHQKLSDSE 285
           C+E F+ CLAIC  V+P G     K  +Q  S  E
Sbjct: 490 CKELFR-CLAICHTVLPEGDESPEKIVYQAASPDE 523


>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 527

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 FHYINVTNPFLVKISFI*L-RKTSLIMLSLCIHLINWT 433
           FH+I+  NP+ + + FI       LIML+L I   N+T
Sbjct: 56  FHFISSNNPYAMNLRFIAADTLQKLIMLTLLIIWANFT 93


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 FHYINVTNPFLVKISFI*L-RKTSLIMLSLCIHLINWT 433
           FH+I+  NP+ + + FI       LIML+L I   N+T
Sbjct: 56  FHFISSNNPYAMNLRFIAADTLQKLIMLTLLIIWANFT 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,541,081
Number of Sequences: 28952
Number of extensions: 188747
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)