Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0152
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    29   0.63 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   7.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.7  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 114 YELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKERRDIVSLSVNGLLKWPVXXXXX 293
           Y L  NF+N QV+    R N +  G   I+ K +  KE+  I +L     L +       
Sbjct: 593 YVLMFNFQNGQVIEHSLRRNQL--GVAPIILKHFDSKEKNAIFALGEKPQLMYYESDKLV 650

Query: 294 XXXXVCTDLL 323
                CT++L
Sbjct: 651 ITPLSCTEML 660


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 384  ETESFSNTFSKIFSKESYNASGGLYT 307
            E +SF+N  +   SKES   SGG++T
Sbjct: 992  EEDSFNNASAAHSSKESDIPSGGVFT 1017


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 251  CERIIEMACVELERFIVVSVYRPPDALYDSFENIL 355
            CE +IEM  + +E+ IV  + R P  L     N+L
Sbjct: 1267 CE-LIEMIWMNIEQSIVYQLLRKPGILRSQLTNLL 1300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,831
Number of Sequences: 5004
Number of extensions: 43195
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)