Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0152
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    29   2.6  
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    29   2.6  
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...    27   7.9  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     27   7.9  

>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 293 FIVVSVYRPPDALYDSFENILENVLLKLSVSNKQIFVC 406
           FI  S Y PP+AL  +F++ +  +++ L+V   Q   C
Sbjct: 564 FIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDC 601


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 293 FIVVSVYRPPDALYDSFENILENVLLKLSVSNKQIFVC 406
           FI  S Y PP+AL  +F++ +  +++ L+V   Q   C
Sbjct: 453 FIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDC 490


>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -2

Query: 431 LKD*YYNHHIQKFVY*RQKALAIHFP----KYFQKNHI 330
           LKD Y N+ +Q  +   +KA+ IH P    K F+K H+
Sbjct: 41  LKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHV 78


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 106 SQCSVTHRTLTLLKSRNKSISSSLPIKPCKF*CT 5
           +Q +  H   TLL+S + S SSS P  P  F C+
Sbjct: 33  AQLTPLHVAFTLLRSSSSSSSSSSPSDPPPFACS 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,002
Number of Sequences: 37544
Number of extensions: 238693
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)