Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0152
         (567 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    40   4e-05
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    31   0.026
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    30   0.046
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    29   0.080
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    28   0.18 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    28   0.24 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    26   0.75 
AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    24   4.0  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 40.3 bits (90), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +2

Query: 269 MACVELERFIVVSVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDY 415
           M  VE+   ++VS Y PP      FE +L+N++L +S S+K + V GD+
Sbjct: 75  MLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFV-VAGDF 122


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 31.1 bits (67), Expect = 0.026
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 251 CERIIEMACVELERFIVVSVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDY 415
           C     +   E+     +S Y PP    D FE  +E V L+ ++++ Q+ + GD+
Sbjct: 72  CSNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLE-TLTHSQVVIAGDF 125


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 30.3 bits (65), Expect = 0.046
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 302 VSVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDY 415
           +SVY PP      +E +LE V L+ S S+  + + GD+
Sbjct: 88  ISVYAPPSLSPQEYERLLEAVELEAS-SHSHVVIAGDF 124


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 0.080
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 9   HQNLQGLMGKELEIDLFLDFNKVNVLCVTEHWL-----KKYELNCNFKNHQVVSSFCREN 173
           +QN++GL  K  E  L +     +++ +TE WL          N NF  ++   S    +
Sbjct: 84  YQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSS 143

Query: 174 AIRGGSLIIVNKDYKCKE 227
           +  GG L+ V+  Y+  E
Sbjct: 144 SRGGGVLLAVSNAYESIE 161


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 28.3 bits (60), Expect = 0.18
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 302 VSVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDY 415
           +SVY PP      FE +L  + L+ + S+ ++ V GD+
Sbjct: 151 ISVYAPPSLSAHEFERLLGAIELE-AASHSRVVVAGDF 187


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 278 VELERFIVVSVYRPPDALYDSFENILENVLLKLSVSNKQIFVCGDY 415
           V++    VVSVY PP    + F+ +L+N ++ ++  +K + + GD+
Sbjct: 76  VDIGDMRVVSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFV-IGGDF 120


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 3   LVHQNLQGLMGKELEIDLFLDFNKVNVLCVTEHWLKK 113
           + +QN++GL  K  E+ L  + +   +L +TE WL +
Sbjct: 9   IYYQNVRGLRTKYNELRLSANESGFEMLALTETWLNE 45


>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 54  LFLDFNKVNVLCVTEHWLKKYELN 125
           L    NKV   C    WLK Y +N
Sbjct: 84  LLAKLNKVRFPCSLVQWLKSYLIN 107


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,240
Number of Sequences: 2352
Number of extensions: 10285
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)