Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0152
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20720.1 68416.m02622 expressed protein                             30   0.94 
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    29   2.2  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    29   2.9  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    27   6.6  
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ...    27   6.6  

>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 239 CEPLCERIIEMACVELERFIVVS-VYRPPDALYDSFENILENVLLKLSVS 385
           C+PL   + E AC+ +  F+    V  P D L D+  N L   L +L VS
Sbjct: 391 CQPLMVHLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKELDVS 440


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -1

Query: 387 LETESFSNTFSKIFSKESYNASGGLYTLTTMNRSSSTQAISIIRSQRGSQCLYV 226
           L+ ESF   +  +  K +  A GGL   ++  ++ +T   +I +S++GS  L++
Sbjct: 81  LDFESFLKVYLNLRDKAADKAGGGLKHSSSFLKAGTTTLHTINQSEKGSFVLHI 134


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -2

Query: 434  FLKD*YYNHHIQKFVY*RQKALAIHFPKYFQKNHITHQEVCTHLQQ*IAQALHRPFQ 264
            FL++ Y     +++    +KA+ +HF   FQ   + H  +   +Q  I   L   FQ
Sbjct: 1709 FLREFYIIEVAEEYPPNMKKAIVLHFLNLFQSKQLGHDHLVQAMQMLILPMLAHAFQ 1765


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 139 FLKLQFNSYFLSQCSVTHR-TLTLLKSRNKSISSSLP 32
           F +L+ N+Y+   C V H  T T+L+ +N       P
Sbjct: 388 FKELEHNNYYCPDCKVQHELTPTILEEQNSVFKKQSP 424


>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
           protein similar to SP|P34909 General negative regulator
           of transcription subunit 4 {Saccharomyces cerevisiae};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 989

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 447 LLDSEHC*SHITSQTYF*SLLGQRPHRATCLDN 545
           +LD +     +TSQ  F  LLGQ  HRA+ L++
Sbjct: 638 ILDFDPWDESLTSQHNFAKLLGQSDHRASTLES 670


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,464,891
Number of Sequences: 28952
Number of extensions: 212713
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)