Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0151
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    67   2e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    29   0.58 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   1.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   2.3  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   2.3  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   3.1  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   4.1  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   9.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 37/94 (39%), Positives = 55/94 (58%)
 Frame = +2

Query: 350 EGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYXDVLPALEQWRQ*RVRKI 529
           E L+ N++   +   K    K +QG IWKKGY+  ++  H++ DV+PA+++  Q  +R +
Sbjct: 54  EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLFPDVVPAIQRSLQLGMR-V 111

Query: 530 YIYSSGSVQAQKLLFGPVICWGTTFLSIDGHFDT 631
           YIYSSGSV AQKL F      G       G++DT
Sbjct: 112 YIYSSGSVPAQKLYFEHSDA-GNLLKYFSGYYDT 144



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
 Frame = +3

Query: 117 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-DEDVKE 248
           K LLLDIEGT  SISFVKDKLFPYA    + +++  ++ DE+++E
Sbjct: 3   KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRE 47


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 22/59 (37%), Positives = 32/59 (54%)
 Frame = +2

Query: 254 DALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLI 430
           +AL KL        +  +VT  G  A KED+   +  ++   MS+ RKVA LK+L+G I
Sbjct: 328 EALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 329 HPLREW*PVLQHSSPD 282
           HP +EW   LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 172 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 17
           ++  +I +  P +  SK  +F+    ITVF    S DP+ +  N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 414 NSRGLSGKKVMIKETSRDTCTTMCYRLLNNGVSRGSERFTSTPLDPSK 557
           N+ G+ GK    +     T  T+C + LN   ++  +   S  LDP +
Sbjct: 213 NANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRR 260


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 111 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDED 239
           + ++  L +E T TSI  +   +FPY    +  F    W  +D
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQD 224


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 269 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 442
           L ++D EK ++     P E  +  KE   +G V N    +SSD+ ++    +  L  +  
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635

Query: 443 YDKGDIKGHVYXDVLPALE 499
            D GDIK      VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 595 PPADDWPKKKFLGLDGSRGVDVNLSDPLLTPLFKSR*HIVVHVSLDVSFIITF 437
           P A+D P + ++ L   +GVD+ LS+      +  R H+    SL    + TF
Sbjct: 269 PNAEDAPSRDYIPLPPHKGVDI-LSEVEAVKDWSKRLHLGPRASLPSVCMYTF 320


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 48  QSWCGSVEMAKENTVIGDIVKKSKVLLLD 134
           + W    +M +E+T+ G I+   K++LLD
Sbjct: 682 EKWMMGRKMTREDTLRGIIMNSGKMVLLD 710


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 RDTCTTMCYRLLNNGVSR 515
           R+T +  CY L  NGV+R
Sbjct: 264 RETSSVSCYELTKNGVNR 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,580
Number of Sequences: 5004
Number of extensions: 57249
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)