Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0151
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 102 3e-22
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 97 1e-20
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 29 3.2
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 4.2
06_01_0608 - 4399252-4399894,4401640-4402427 27 9.7
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 27 9.7
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 27 9.7
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 102 bits (244), Expect = 3e-22
Identities = 55/124 (44%), Positives = 76/124 (61%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKK 439
LR ED + + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG IW+
Sbjct: 325 LRIQVEEDLKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRT 384
Query: 440 GYDKGDIKGHVYXDVLPALEQWRQ*RVRKIYIYSSGSVQAQKLLFGPVICWGTTFLSIDG 619
G++ +++G V+ DV AL+ W K+YIYSSGS +AQ+LLFG +G + G
Sbjct: 385 GFESKELQGVVFDDVPEALKHWHA-SGMKVYIYSSGSREAQRLLFGNT-AYGDLRQYLCG 442
Query: 620 HFDT 631
FDT
Sbjct: 443 FFDT 446
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 254
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE +
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDI 322
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 97.1 bits (231), Expect = 1e-20
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Frame = +2
Query: 260 LRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQLQGLI 430
LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQLQG I
Sbjct: 954 LRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRI 1012
Query: 431 WKKGYDKGDIKGHVYXDVLPALEQWRQ*RVRKIYIYSSGSVQAQKLLFGPVICWGTTFLS 610
W++G+D G+++ VY D AL +WR K YIYSSGS +AQ+L+F G
Sbjct: 1013 WRRGFDSGELRSEVYDDAADALRRWR----AKAYIYSSGSREAQRLIFANTAAHGDLRDH 1068
Query: 611 IDGHFDT 631
+ G FDT
Sbjct: 1069 LCGFFDT 1075
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +3
Query: 72 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEA 251
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + + A
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 63 SVEMAKENTV-IGDIVKKSKVLL--LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDD 233
SV+MA E +V V+ ++ L + +E T+++ +K+ LFP E + A+W+D
Sbjct: 479 SVQMALERSVGYSGRVEAARATLDQVKVEDIDTNVAVLKELLFPLIEIGKRLLFLAEWED 538
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 347 IEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 463
+EG +K + Q+ D+KVA K + I GY++GD K
Sbjct: 462 LEGTLK-IDQQIEGDQKVANKKVTEEEILTNGYEQGDAK 499
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 183 PYAEENVKDFLDAQWDDEDVK 245
PY E++++ LD + D+EDV+
Sbjct: 371 PYTEDDIRKILDIRCDEEDVE 391
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 620 AHRWRGK*SPSR*LAQKEVSGLGRIQRSRCKSF*PSTDAIVQEPVAHRXTRVP*CLL 450
A RWRG S + A ++++G R R RC A + P H R+P C +
Sbjct: 20 AARWRGVGSDAGGGAGRKMAGRRRESRRRCAL--GGASAASESPPLHLYQRLPKCCI 74
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 293 SVEGLVTIPGEDASKE--DQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 442
+ +GL+T +D E DQIE L+++ K++ +DR+ + LI K G
Sbjct: 456 AAQGLITAGDKDIILEGLDQIEKLIQDGKFEWRTDREDVHMNIEAALIEKVG 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,206
Number of Sequences: 37544
Number of extensions: 380147
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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