Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0151
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4) 90 2e-18
SB_22818| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43) 29 4.3
SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08) 28 5.7
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25) 28 7.5
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 28 7.5
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 27 9.9
>SB_56823| Best HMM Match : Rhabdo_NV (HMM E-Value=7.4)
Length = 157
Score = 89.8 bits (213), Expect = 2e-18
Identities = 43/85 (50%), Positives = 56/85 (65%)
Frame = +2
Query: 323 EDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYXDVLPALEQ 502
E A +E L+ + M DRK LK LQG+IW++GY GD GH+Y DVLP+LE+
Sbjct: 14 EIAQPAASVEQLIATLFAFMDEDRKSTALKALQGIIWREGYVNGDFTGHLYPDVLPSLEK 73
Query: 503 WRQ*RVRKIYIYSSGSVQAQKLLFG 577
W+ + +Y+YSSGSV AQKLLFG
Sbjct: 74 WKSQGI-DLYVYSSGSVAAQKLLFG 97
>SB_22818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 431 WKKGYDKGDIKGHVYXDVLPALE 499
W G DKGD+ G VY D+ A +
Sbjct: 5 WLSGMDKGDLSGVVYFDIRKAFD 27
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +2
Query: 302 GLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYD 448
G + PGED +K+D I+ L + ++ + S R++ +L+GL++ K D
Sbjct: 201 GHLAPPGEDKTKQDLIQNLGR-LRQRRRSIREIQNRDELEGLMYVKQGD 248
>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1111
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/108 (24%), Positives = 45/108 (41%)
Frame = +2
Query: 263 RKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 442
++ A+ED +S + + E S+ E +K + Q S D K + W
Sbjct: 401 KRAALEDHAQSQQHKAAVEAELLSRVSSFEVAIKEI--QSSKDEVY--YKTFLAMYWLA- 455
Query: 443 YDKGDIKGHVYXDVLPALEQWRQ*RVRKIYIYSSGSVQAQKLLFGPVI 586
K ++ + +L LEQ ++ S+GSV+ LL G V+
Sbjct: 456 --KEEMPNKKFTSLLSVLEQLGLDNIKYFQHRSAGSVREMFLLIGSVL 501
>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
Length = 453
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 118 LLFLTISPITVFSFAISTDPHQLCRNYF-YVFQNLFD*NS 2
L FL SP VFSF + P LC +F + Q L NS
Sbjct: 253 LFFLCWSPTVVFSFLVLFGPPGLCMKHFRFTSQFLVQSNS 292
>SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
Length = 533
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 625 EMPIDGEESSPPADDWPKKKFLGLDGSRG 539
EMP G PP DD+P K+ + D RG
Sbjct: 370 EMPRYGSRDLPPEDDYPVKRGIPDDEYRG 398
>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 254 HCFFDILIIPLGI-KKIFHIFFSIRK*FVLNKADRCCSSFNIKKQNFAFLNNIADYSILF 78
HC ++ + G+ + +F+ S+R N+A+R C F + A ++ + +
Sbjct: 285 HCGTELGFVQHGVFRNVFNAAASVRYVIKFNEANRLCQVFGARLATIAQVDQAWKFGLFE 344
Query: 77 CHF 69
C +
Sbjct: 345 CRY 347
>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
Length = 357
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 135 IEGTTTSISFVKDKLFPYAE--ENVKDFLDAQWDDEDVKEAV 254
I G + V D L+ Y E ENV+D+L+A ++ KE +
Sbjct: 214 IAGLGQAAQLVVDHLYEYQEHMENVRDYLEASLTEKFGKECI 255
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 57 CGSVEMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDK 176
CG+ AK+ I D KS V +L+ E TTT +S KD+
Sbjct: 29 CGNASTAKK---IFDRDVKSYVFILEGESTTTKMSIPKDE 65
>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
Length = 634
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 372 NGRCRPTVKLPL*SNSRGLSGKKVMIKETSRDT-CTTMCYRLLNNGV 509
N R P + + S +G G+ MIK+TSRD+ +M Y ++NG+
Sbjct: 130 NRRFDPGFRSIIESAKKGKVGQIHMIKQTSRDSPLPSMEYLKISNGI 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,649,497
Number of Sequences: 59808
Number of extensions: 414232
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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