Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0150
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-3|AAY86262.1|  174|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AF025457-11|AAB70970.1|  240|Caenorhabditis elegans Hypothetical...    29   1.7  
AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    28   3.9  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    28   5.1  

>U51995-3|AAY86262.1|  174|Caenorhabditis elegans Hypothetical
           protein F07G6.9 protein.
          Length = 174

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 238 LFFIYYITCTKQLFEISKIFRRT--SXPLQRVFRWRHCSQLKPF 113
           +FF++Y    K+L +  +IFRRT     L  VF   +CSQ   F
Sbjct: 92  IFFVFYANKLKRLDKAKRIFRRTHPGENLVIVFSDEYCSQKAEF 135


>AF025457-11|AAB70970.1|  240|Caenorhabditis elegans Hypothetical
           protein C08E3.12 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 223 YITCTKQLFEISKIFRRTSXPLQRVFRWRHCSQLKPFFR 107
           +I C ++ F+ +K   RT   L + F WR  +QL P F+
Sbjct: 63  FIDCAEKTFKSAKSATRTV--LAKYFSWRELAQLLPIFQ 99


>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -2

Query: 340 LFVQIVLKMYPATSRRIHRNNATASEAHQVLFSILFFIYYITCTKQLFEISKIFRRTSXP 161
           +F    L +YP  SR    +N   +    +LF  L  ++Y     Q  +  KI +R    
Sbjct: 154 MFCNPPLALYPTVSRFWTFSNVVINTITLILFISLILVFYYKGKTQKSDTRKIMKRLKVS 213

Query: 160 LQ-RVFRW 140
           +   +F W
Sbjct: 214 IMFFIFTW 221


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/66 (19%), Positives = 30/66 (45%)
 Frame = -2

Query: 325 VLKMYPATSRRIHRNNATASEAHQVLFSILFFIYYITCTKQLFEISKIFRRTSXPLQRVF 146
           +L+++P     ++ N   A  + Q+  +  +FIY I C  +L +++         + R +
Sbjct: 285 ILQLFPLFVFHMYDNLTPAELSGQISNNAFYFIYLINCFTRLTDLAMNIAELGGYIMRFY 344

Query: 145 RWRHCS 128
               C+
Sbjct: 345 SEHFCN 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,988
Number of Sequences: 27780
Number of extensions: 233030
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)