Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0150
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At2g27505.1 68415.m03326 expressed protein ; expression supporte...    28   4.8  

>At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 745

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 465 VNLIS*STSNKLCISCHNIFKL 530
           VNLI    + ++CI CHN  KL
Sbjct: 693 VNLIQIMKNTRICIDCHNFMKL 714


>At2g27505.1 68415.m03326 expressed protein ; expression supported
           by MPSS
          Length = 282

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 377 LRLPKDSLGLVRS*FKLSRY-VLEIDSVPLCESYKLKYIK 493
           L +P+ +L LV+  F   +   +++ +VPLC    LKY+K
Sbjct: 183 LTMPRSNLDLVQDYFYSCKPGEIDLTNVPLCMQSTLKYVK 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,907
Number of Sequences: 28952
Number of extensions: 206882
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)