Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0149
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.67 
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    27   2.7  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   2.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.5  

>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 30  FVIKIKMYTYLSTRLSEPTSVGLSIILLSIKDYLFEKFEKKLRYINKKSLIDKEARYKKN 209
           ++IKI M    S R     ++    I+L   DY   KFE+ +  +   SL   E +  K 
Sbjct: 577 WMIKIVMTHQFSVRGGVQFAMDAMQIVLEFSDYPLLKFERLMSTVELLSLESGENKLIKK 636

Query: 210 RVILIKKSN 236
            +I I + N
Sbjct: 637 LIIEINQKN 645


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 358 NIYTQVHYTRRGGGAMLQAASSARTLTYFAVTISNDY 248
           N   +  Y R G  + + A S A T TY+   +++DY
Sbjct: 127 NCLKESDYVRNGSSSGIIALSKAETDTYWNAILNHDY 163


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 404 LKLYTKNDGTIIINN*YLYTSTLHTARRRRDAP 306
           L  Y K    +I NN    T T HT  RRRD P
Sbjct: 106 LYFYNKRYDMVITNNKLRMTYTYHTV-RRRDTP 137


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 159 YINKKSLIDKEARYKKNRVILIKKSNSLRL*SF 257
           YINKK  +++ +RYK N ++L++  NS  +  F
Sbjct: 479 YINKKKNLNEVSRYKIN-LLLLQGVNSFEVKDF 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,719
Number of Sequences: 5004
Number of extensions: 36436
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)