Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0149
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120...    30   1.6  
05_03_0453 - 14223012-14223175,14223956-14223992,14224171-142243...    27   8.4  

>11_01_0145 +
           1204021-1204296,1204430-1204492,1204667-1204795,
           1205778-1205834,1205915-1206213,1206539-1206630,
           1206747-1206961,1207142-1207325,1207447-1207541,
           1208572-1208628,1209372-1209426,1209955-1210079
          Length = 548

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 408 YIKIIYQKRRDYYN**LIFIHKYITHGAAAARCSRQRRPRAP 283
           YI   Y K RDY     I++H Y+ +GA A+R    +R   P
Sbjct: 258 YITEEYLKGRDYN----IYVHSYLHYGAQASRVEILKRKNGP 295


>05_03_0453 -
           14223012-14223175,14223956-14223992,14224171-14224312,
           14224858-14225038,14225460-14225655
          Length = 239

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/53 (24%), Positives = 31/53 (58%)
 Frame = +3

Query: 42  IKMYTYLSTRLSEPTSVGLSIILLSIKDYLFEKFEKKLRYINKKSLIDKEARY 200
           +K Y  +S +++  +SV    ++      L+EK+E ++  + +K+LI+ + +Y
Sbjct: 168 LKTYLMISLQITT-SSVSQFFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQY 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,428
Number of Sequences: 37544
Number of extensions: 205783
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)