Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0149
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 144 EKKLRYINKKSLIDKEAR 197
           EK  R+IN  S IDK AR
Sbjct: 456 EKIARHINSVSYIDKVAR 473


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +3

Query: 51  YTYLSTRLSEPTSVGLSIILLSIKDYLFEKFEKKLRYINKKSLIDKEARY 200
           + +L T L    +V +S++LLS+        + ++ ++ ++   D   RY
Sbjct: 126 HQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRY 175


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 339 ITHGAAAARCSRQRR 295
           I H A A RC  QRR
Sbjct: 76  INHSACAIRCLAQRR 90


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 389 KNDGTIIINN*YLYTSTLHTARRRRDAPGSVVRA 288
           KND  +  N+ YLY +T+    +R +   +V  A
Sbjct: 367 KNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAA 400


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 389 KNDGTIIINN*YLYTSTLHTARRRRDAPGSVVRA 288
           KND  +  N+ YLY +T+    +R +   +V  A
Sbjct: 405 KNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAA 438


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 81  PTSVGLSIILLSIKDYLFEKFEKKLRYINKKSLIDKEARYKK 206
           P  VG+++ +LSI      K +  L +  ++   D    +KK
Sbjct: 35  PVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,487
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)