Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0148
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 SGNIPEAIQSYRTALKLKPDFPDAYCNLAHC 226
           SG IP   + +    + + D+ DA+CN+  C
Sbjct: 336 SGEIPLEEEEWEN--ENESDYQDAFCNIVSC 364


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 574 HSRIFPLFVRSCKP 533
           H R++P F  SC P
Sbjct: 68  HHRLYPAFSSSCDP 81


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 466 LRIGYVSSDFGNHPNR 513
           LR GYV+ D  N P R
Sbjct: 320 LRRGYVAGDSKNQPPR 335


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 466 LRIGYVSSDFGNHPNR 513
           LR GYV+ D  N P R
Sbjct: 31  LRRGYVAGDSKNQPPR 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,241
Number of Sequences: 438
Number of extensions: 4294
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)