Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0147
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.47 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.47 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.47 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.47 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.47 
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      24   1.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.4  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
           RR L  F N ++  PCV++S++ +LG+ +   S
Sbjct: 209 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 239


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
           RR L  F N ++  PCV++S++ +LG+ +   S
Sbjct: 209 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 239


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
           RR L  F N ++  PCV++S++ +LG+ +   S
Sbjct: 209 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 239


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
           RR L  F N ++  PCV++S++ +LG+ +   S
Sbjct: 209 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 239


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
           RR L  F N ++  PCV++S++ +LG+ +   S
Sbjct: 209 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 239


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 575 WVPFNQVAQNI 543
           WV FNQ AQN+
Sbjct: 35  WVSFNQTAQNV 45


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 137 RTQKSLARVSVWLESGRYRRTQEI 208
           RT+ + AR+ VW  + R R  ++I
Sbjct: 256 RTKLTEARIQVWFSNRRARLRKQI 279


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 171 QTLTRAKDFCVRKRPN 124
           +T     D CVRKRP+
Sbjct: 9   ETAGEVLDLCVRKRPH 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,178
Number of Sequences: 336
Number of extensions: 2651
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)