Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0147
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    27   2.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   3.5  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   4.7  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.2  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   6.2  

>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 55  VEANLLFKCNYIRNQCP 105
           VEA LL KC+Y+  +CP
Sbjct: 71  VEARLLAKCHYVGIKCP 87


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 302 VASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSK 427
           VA SS  V     E   ++  E  +P P+I      IT+F K
Sbjct: 329 VAFSSETVTSSSKERKRSVENEMLKPHPTIFESPPEITSFDK 370


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 198 VLLYLPLSSQT--LTRAKDFCVRKRPNYL*SKCRALITDIVTL 76
           V L++P S +T  +  +K+F   K  +YL +  R  + DI  L
Sbjct: 251 VSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPAL 293


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 141 HKNPWRVLVSGLKAEDIEELKR 206
           H + WR+ V G+  EDI +  R
Sbjct: 37  HTHTWRIFVEGVDGEDISKWVR 58


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 417 LVMLSCSTIIEGSGSENSFLIVHIY 343
           L M  C+ I+EG  +EN  LI+ +Y
Sbjct: 432 LFMSLCTAILEGVSTENDNLILPMY 456


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 468 RSLNITLLPNKT*LGINNMESKGSPNVLSHLVKW 569
           +S+NIT  P  T  GI ++ SK  PN+ S  V++
Sbjct: 198 KSINITQCPLLTDAGIFSLLSKIGPNLSSVCVQY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,990
Number of Sequences: 5004
Number of extensions: 44243
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)