Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0147
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    28   4.8  
04_03_0612 + 18023354-18023916,18024046-18024805                       28   6.3  

>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 296 KVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKE 430
           K   SS+ +  Q  + +  TM    +EP    +VE  NI+  SKE
Sbjct: 849 KASFSSNASYPQGGDLWQGTMANHSAEPSKHFVVESSNISEQSKE 893


>04_03_0612 + 18023354-18023916,18024046-18024805
          Length = 440

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 131 LLRTQKSLARVSVWLESGRYRRTQEICVRRLL*QFHNSLLTNPCVILSALEV 286
           L ++ K+L  +S+W+  G Y     I  R  L       LTN C +L  +E+
Sbjct: 244 LSQSCKNLKSISLWMIPGLYHEPDGIVFRTDLTDESLEALTNNCPLLQDVEL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,550
Number of Sequences: 37544
Number of extensions: 247252
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)