Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0147
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               27   8.5  
SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 27   8.5  

>SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 QFHNSLLTNPCVILSALEVLGYKVVASSSTAV 325
           ++H   L  PC++LS L VLG+ + + S   +
Sbjct: 65  KYHMFYLVGPCLMLSILAVLGFFIPSESGERI 96


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 58   PLNYKCLYKQFIYKIKVH 5
            P+ Y+C Y ++IY  K H
Sbjct: 1225 PMKYRCAYNKYIYNPKTH 1242


>SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 625

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 58  PLNYKCLYKQFIYKIKVH 5
           P+ Y+C Y ++IY  K H
Sbjct: 264 PMKYRCAYNKYIYNPKTH 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,357
Number of Sequences: 59808
Number of extensions: 300259
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)