Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0147
(586 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.55
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.55
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.55
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 25 0.55
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 3.9
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 8.9
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 8.9
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 260 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 290
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV++S++ +LG+ + S
Sbjct: 260 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 290
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313
RR L F N ++ PCV+++++ VLG+ + S
Sbjct: 229 RRTLYYFFNLIV--PCVLIASMAVLGFTLPPDS 259
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 25.0 bits (52), Expect = 0.55
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 102 PYILIRGNLASYGHKNPWRVLVSGLKAEDIEELKRFACGGYC 227
P++ +R +A P +L D E K F C GYC
Sbjct: 423 PFVYVR-EIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYC 463
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 22.2 bits (45), Expect = 3.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 199 SRDLRAEVTVTIPQ*STYKSLRYTECFRSFGLQSSCF 309
+RD + TV++ Q + + + FG+QS+ F
Sbjct: 355 NRDFQTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDF 391
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 52 NYKCLYKQFIYKIK 11
NYK LYK +I I+
Sbjct: 112 NYKKLYKNYIINIE 125
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 52 NYKCLYKQFIYKIK 11
NYK LYK +I I+
Sbjct: 112 NYKKLYKNYIINIE 125
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +2
Query: 2 LVNLYFVNKLFI*TFIVQWKQIFFLSV 82
LV L +++L ++ QW++++FL++
Sbjct: 216 LVRLLRLSRLV--RYVSQWEEVYFLNM 240
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,580
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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