Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0146
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     77   1e-14
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   1.9  
SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)           27   7.7  
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     27   7.7  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 29/60 (48%), Positives = 44/60 (73%)
 Frame = +2

Query: 287 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 466
           +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    +KE+ + +F S PGVFGN
Sbjct: 74  VRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKESALNIFCSFPGVFGN 133



 Score = 27.9 bits (59), Expect(2) = 0.012
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 3  QFYQLLNTLLSTDNDIRSQAE 65
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.012
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 144 DVRQTAAVLLRRLFSA 191
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 296 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 412
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)
          Length = 418

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 92  NKSSAPSEFNSKCRHCRRCASNGGRAVTKII*CRIL*VLPEIAI 223
           N  S   + N K  H       GG+  TK I  R+L  LP+I +
Sbjct: 153 NLDSFKVDRNKKISHMANYVILGGQLYTKAITARLLDALPDITV 196


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = -1

Query: 462 PNTPGTDVNILXPASLMFGSCALAQVNMNCRNSGHWLLPSSSI*FLASSETTSQTFLRKY 283
           P+   T    + P+S+   +  ++ VN++  +    L+PS S   L+ + T   TF    
Sbjct: 459 PDETSTAATAISPSSVANMTTLVSSVNLSRSSLSTTLIPSISTSILSYNTTVIATFNTTR 518

Query: 282 WERSI*RVSTIVL*ALSAAQMAISGRTQRI 193
              S   +ST+ + ALS      S    R+
Sbjct: 519 LVTSTISLSTVNVSALSTTSSIESTTMARV 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,427
Number of Sequences: 59808
Number of extensions: 267572
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)